Variant report

Variant	rs1487227
Chromosome Location	chr5:113389560-113389561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10076931	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13171100	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs873511	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471042	chr5:113160490-113440892	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1487227	TRIM36	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113385800-113389800	Weak transcription	Fetal Heart	heart
2	chr5:113386000-113389600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:113387800-113390200	Weak transcription	Pancreas	Pancrea
4	chr5:113388200-113390200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr5:113388200-113390800	Enhancers	Colon Smooth Muscle	Colon
6	chr5:113388400-113391000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:113388800-113391200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:113389200-113390000	Enhancers	Stomach Smooth Muscle	stomach
9	chr5:113389200-113390600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
10	chr5:113389200-113390800	Bivalent Enhancer	Fetal Muscle Leg	muscle
11	chr5:113389400-113389800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr5:113389400-113390400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
13	chr5:113389400-113390400	Enhancers	Fetal Brain Female	brain
14	chr5:113389400-113390600	Bivalent Enhancer	Fetal Stomach	stomach
15	chr5:113389400-113390600	Enhancers	Ovary	ovary
16	chr5:113389400-113390800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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