Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:17004932..17007249-chr9:17011274..17013104,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10511632	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10962796	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10962797	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10962798	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10962801	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10962811	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10962812	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10962813	0.92[ASN][1000 genomes]
rs10962814	1.00[ASN][1000 genomes]
rs10962819	0.84[EUR][1000 genomes]
rs12236468	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12236482	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1487498	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1487499	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs16935232	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16935239	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16935253	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs392302	0.93[EUR][1000 genomes]
rs4961519	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs57076691	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv613692	chr9:16963863-17070633	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17005800-17008200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:17006400-17007600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:17006400-17010000	Enhancers	Fetal Intestine Large	intestine
4	chr9:17006400-17012600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:17006800-17009200	Weak transcription	Fetal Intestine Small	intestine

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