Variant report
| Variant | rs16935239 |
|---|---|
| Chromosome Location | chr9:16999749-16999750 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10511632 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10962796 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10962797 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10962798 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10962801 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10962808 | 0.80[ASN][1000 genomes] |
| rs10962811 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10962812 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10962813 | 0.82[ASN][1000 genomes] |
| rs10962814 | 0.90[ASN][1000 genomes] |
| rs10962819 | 0.84[EUR][1000 genomes] |
| rs12236468 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12236482 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1487498 | 0.81[ASN][1000 genomes] |
| rs1487499 | 0.81[ASN][1000 genomes] |
| rs1487503 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs16935232 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs16935253 | 0.81[ASN][1000 genomes] |
| rs392302 | 0.93[EUR][1000 genomes] |
| rs4961519 | 0.81[ASN][1000 genomes] |
| rs57076691 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024799 | chr9:16631890-17431827 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 2 | esv2764141 | chr9:16903446-17351711 | Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv466268 | chr9:16958700-17002275 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv613691 | chr9:16958700-17002275 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS | n/a | n/a | inside rSNPs | diseases |
| 5 | nsv613692 | chr9:16963863-17070633 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:16997600-17002000 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr9:16997600-17004600 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
