Variant report

Variant	rs1488193
Chromosome Location	chr3:112681585-112681586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1016348	0.90[CHB][hapmap]
rs12497951	0.80[ASN][1000 genomes]
rs1387023	0.95[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap]
rs1392786	0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1844084	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2087284	0.91[CHB][hapmap]
rs2276769	0.82[CHD][hapmap]
rs4103791	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs4234417	0.91[CHB][hapmap]
rs4682125	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs4682441	0.89[CHB][hapmap]
rs4682447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6438118	0.91[CHB][hapmap]
rs6438119	0.91[CHB][hapmap]
rs6438120	0.91[CHB][hapmap];0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs6438122	0.91[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs6769091	0.90[CHB][hapmap];0.80[ASN][1000 genomes]
rs6784838	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs6808249	0.91[CHB][hapmap]
rs7615462	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs7615572	0.87[CHB][hapmap]
rs7622812	0.90[CHB][hapmap]
rs7622814	0.90[CHB][hapmap]
rs7640561	0.86[CHB][hapmap]
rs7646849	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs9823363	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs9826308	0.91[CHB][hapmap]
rs9833991	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs9834353	0.91[CHB][hapmap]
rs9834840	0.80[ASN][1000 genomes]
rs9847365	0.91[CHB][hapmap]
rs9854885	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs9864295	0.91[CHB][hapmap]
rs9865242	0.91[CHB][hapmap]
rs9870335	0.80[ASN][1000 genomes]
rs9870568	0.86[CHB][hapmap]
rs9871985	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs9877631	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Economic and political preferences	22566634	GWAS catalog

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112675800-112682600	Weak transcription	Spleen	Spleen
2	chr3:112675800-112682800	Weak transcription	Adipose Nuclei	Adipose
3	chr3:112676200-112682000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr3:112678200-112681600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:112678200-112684000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr3:112679200-112682000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr3:112679200-112682600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr3:112679400-112681800	Weak transcription	Primary T cells from cord blood	blood
9	chr3:112679400-112681800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr3:112679600-112682600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:112681200-112681600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr3:112681200-112681800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr3:112681400-112681800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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