Variant report

Variant	rs1387023
Chromosome Location	chr3:112547496-112547497
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1016348	0.84[CHB][hapmap]
rs10934190	0.81[ASN][1000 genomes]
rs10934192	0.83[ASN][1000 genomes]
rs10934193	0.83[ASN][1000 genomes]
rs13326243	0.83[ASN][1000 genomes]
rs1387022	1.00[CEU][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs1387024	0.83[CHB][hapmap]
rs1392786	0.86[CHB][hapmap]
rs1488193	0.95[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap]
rs1500879	0.81[ASN][1000 genomes]
rs1601845	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1844084	0.91[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap]
rs2087284	0.86[CHB][hapmap]
rs2101440	0.81[ASN][1000 genomes]
rs2129941	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2399443	0.83[ASN][1000 genomes]
rs4103791	0.86[CHB][hapmap]
rs4234417	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs4682120	0.83[ASN][1000 genomes]
rs4682125	0.86[CHB][hapmap]
rs4682431	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4682433	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4682440	0.83[ASN][1000 genomes]
rs4682441	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs4682444	0.83[ASN][1000 genomes]
rs4682447	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs6438118	0.86[CHB][hapmap]
rs6438119	0.86[CHB][hapmap]
rs6438120	0.86[CHB][hapmap]
rs6438122	0.86[CHB][hapmap]
rs6763040	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6766388	0.83[ASN][1000 genomes]
rs6769091	0.90[CHB][hapmap]
rs6784838	0.86[CHB][hapmap]
rs6791158	0.83[ASN][1000 genomes]
rs6791672	0.81[ASN][1000 genomes]
rs6808249	0.86[CHB][hapmap]
rs6808927	0.98[EUR][1000 genomes]
rs7615462	0.86[CHB][hapmap]
rs7615572	0.82[CHB][hapmap]
rs7622812	0.85[CHB][hapmap]
rs7622814	0.85[CHB][hapmap]
rs7632218	0.81[ASN][1000 genomes]
rs7640561	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];0.86[LWK][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7642576	1.00[CEU][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs7646849	0.86[CHB][hapmap]
rs7652536	0.81[ASN][1000 genomes]
rs9822448	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9823363	0.86[CHB][hapmap]
rs9826308	0.86[CHB][hapmap]
rs9833991	0.86[CHB][hapmap]
rs9834353	0.86[CHB][hapmap]
rs9847365	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs9854885	0.86[CHB][hapmap]
rs9864295	0.86[CHB][hapmap]
rs9865242	0.86[CHB][hapmap]
rs9868839	0.81[ASN][1000 genomes]
rs9870568	0.81[CHB][hapmap]
rs9871985	0.86[CHB][hapmap]
rs9875551	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv877343	chr3:112470586-112597706	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3501334	chr3:112546820-112648766	Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3501335	chr3:112546820-112648766	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1387023	RGS1	trans	brain	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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