Variant report

Variant	rs1601845
Chromosome Location	chr3:112603180-112603181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1016348	0.90[CHB][hapmap]
rs1387022	1.00[CEU][hapmap];0.90[TSI][hapmap];0.98[EUR][1000 genomes]
rs1387023	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.89[YRI][hapmap]
rs1392786	0.91[CHB][hapmap]
rs1488193	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs1844084	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs2087284	0.91[CHB][hapmap]
rs2129941	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4103791	0.91[CHB][hapmap]
rs4234417	0.91[CHB][hapmap]
rs4682125	0.91[CHB][hapmap]
rs4682431	1.00[EUR][1000 genomes]
rs4682433	1.00[CEU][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4682441	0.89[CHB][hapmap]
rs4682447	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs6438118	0.91[CHB][hapmap]
rs6438119	0.91[CHB][hapmap]
rs6438120	0.91[CHB][hapmap]
rs6438122	0.91[CHB][hapmap]
rs6763040	1.00[CEU][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6769091	0.90[CHB][hapmap]
rs6784838	0.91[CHB][hapmap]
rs6808249	0.91[CHB][hapmap]
rs6808927	0.98[EUR][1000 genomes]
rs7615462	0.91[CHB][hapmap]
rs7615572	0.87[CHB][hapmap]
rs7622812	0.90[CHB][hapmap]
rs7622814	0.90[CHB][hapmap]
rs7640561	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[MKK][hapmap];0.90[TSI][hapmap];1.00[EUR][1000 genomes]
rs7642576	1.00[CEU][hapmap];0.90[TSI][hapmap];0.98[EUR][1000 genomes]
rs7646849	0.91[CHB][hapmap]
rs9822448	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9823363	0.91[CHB][hapmap]
rs9826308	0.91[CHB][hapmap]
rs9833991	0.91[CHB][hapmap]
rs9834353	0.91[CHB][hapmap]
rs9847365	0.91[CHB][hapmap]
rs9854885	0.91[CHB][hapmap]
rs9864295	0.91[CHB][hapmap]
rs9865242	0.91[CHB][hapmap]
rs9870568	0.86[CHB][hapmap]
rs9871985	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	esv3501334	chr3:112546820-112648766	Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3501335	chr3:112546820-112648766	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112602600-112608400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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