Variant report

Variant	rs1488303
Chromosome Location	chr4:27154302-27154303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10027736	1.00[ASN][1000 genomes]
rs11940551	0.81[AFR][1000 genomes]
rs16878930	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2171516	1.00[ASN][1000 genomes]
rs55763087	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690624	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002082	chr4:27078850-27377252	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv997608	chr4:27085524-27371848	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv999134	chr4:27115301-27270500	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv4280	chr4:27124809-27169850	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27152200-27155400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:27152200-27155800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:27152200-27155800	Weak transcription	NH-A	brain
4	chr4:27152200-27156000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:27152200-27156200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:27152400-27155800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:27152400-27155800	Weak transcription	HSMMtube	muscle
8	chr4:27152600-27154400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:27152600-27154400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:27152600-27155200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:27152600-27155200	Weak transcription	HSMM	muscle
12	chr4:27152600-27155800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr4:27154200-27154800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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