Variant report

Variant	rs11940551
Chromosome Location	chr4:27162478-27162479
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1488303	0.81[AFR][1000 genomes]
rs16878873	0.82[AMR][1000 genomes]
rs16878892	0.91[CEU][hapmap];0.87[CHB][hapmap];0.81[CHD][hapmap];0.84[MEX][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16878895	0.93[ASN][1000 genomes]
rs16878919	0.99[ASN][1000 genomes]
rs6853864	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7688702	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002082	chr4:27078850-27377252	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv997608	chr4:27085524-27371848	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv999134	chr4:27115301-27270500	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv4280	chr4:27124809-27169850	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27157600-27162800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr4:27162400-27163200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr4:27162400-27163400	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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