Variant report

Variant	rs7688702
Chromosome Location	chr4:27128902-27128903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11940551	0.86[EUR][1000 genomes]
rs16878873	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16878892	0.87[ASW][hapmap];1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59123676	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59354480	0.85[ASN][1000 genomes]
rs6853864	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002082	chr4:27078850-27377252	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv997608	chr4:27085524-27371848	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv999134	chr4:27115301-27270500	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv4280	chr4:27124809-27169850	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27124600-27129000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:27125600-27129000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:27125600-27130000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:27125600-27130800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:27125800-27129000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:27125800-27129200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:27125800-27130400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:27126000-27129200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:27126000-27130200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:27126200-27129000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:27126200-27130600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:27126400-27129000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr4:27126600-27130200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:27126600-27131800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr4:27127600-27129400	Enhancers	Fetal Intestine Small	intestine
16	chr4:27127600-27130400	Enhancers	H9 Cell Line	embryonic stem cell
17	chr4:27127800-27129400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:27128000-27129400	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr4:27128200-27129200	Enhancers	Duodenum Mucosa	Duodenum
20	chr4:27128200-27129400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr4:27128200-27129400	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr4:27128200-27129600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr4:27128400-27129200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr4:27128600-27129200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:27128600-27130400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr4:27128800-27129200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr4:27128800-27129400	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr4:27128800-27129400	Enhancers	Fetal Intestine Large	intestine
29	chr4:27128800-27129400	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr4:27128800-27129600	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr4:27128800-27132200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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