Variant report

Variant	rs59123676
Chromosome Location	chr4:27130160-27130161
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16878873	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16878892	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59354480	0.94[ASN][1000 genomes]
rs6853864	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7688702	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002082	chr4:27078850-27377252	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv997608	chr4:27085524-27371848	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv999134	chr4:27115301-27270500	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv4280	chr4:27124809-27169850	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27125600-27130800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:27125800-27130400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:27126000-27130200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:27126200-27130600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:27126600-27130200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:27126600-27131800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr4:27127600-27130400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr4:27128600-27130400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr4:27128800-27132200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:27129400-27130200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:27129400-27130800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:27129400-27131400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr4:27129600-27130200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:27129600-27130200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:27129600-27130800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr4:27129600-27130800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr4:27129600-27133600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:27130000-27130400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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