Variant report

Variant	rs16878873
Chromosome Location	chr4:27131424-27131425
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11940551	0.82[AMR][1000 genomes]
rs16878892	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59123676	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59354480	0.95[ASN][1000 genomes]
rs6853864	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7688702	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002082	chr4:27078850-27377252	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv997608	chr4:27085524-27371848	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv999134	chr4:27115301-27270500	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv4280	chr4:27124809-27169850	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27126600-27131800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:27128800-27132200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:27129600-27133600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:27130200-27131600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:27130200-27131800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:27130400-27131600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:27130800-27131800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:27130800-27132000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:27130800-27132800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:27131200-27131600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:27131200-27131800	Enhancers	Adipose Nuclei	Adipose
12	chr4:27131400-27131600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:27131400-27131600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:27131400-27131800	Enhancers	Fetal Muscle Leg	muscle
15	chr4:27131400-27132200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr4:27131400-27132800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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