Variant report

Variant	rs16878919
Chromosome Location	chr4:27157015-27157016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11940551	0.99[ASN][1000 genomes]
rs16878892	0.87[CHB][hapmap]
rs16878895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59354480	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002082	chr4:27078850-27377252	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv997608	chr4:27085524-27371848	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv999134	chr4:27115301-27270500	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv4280	chr4:27124809-27169850	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27154400-27158000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:27155200-27157600	Enhancers	HSMM	muscle
3	chr4:27155200-27158000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:27155400-27157400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:27155400-27157600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:27155600-27157800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:27155800-27157200	Enhancers	NH-A	brain
8	chr4:27155800-27157400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr4:27155800-27157400	Enhancers	Fetal Muscle Leg	muscle
10	chr4:27155800-27157600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr4:27155800-27157600	Enhancers	HSMMtube	muscle
12	chr4:27155800-27157800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr4:27156000-27157600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:27156400-27157200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:27156800-27157400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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