Variant report

Variant	rs1490159
Chromosome Location	chr3:21709555-21709556
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11129014	0.97[ASN][1000 genomes]
rs12491669	0.96[ASN][1000 genomes]
rs12497214	0.97[ASN][1000 genomes]
rs13100753	0.96[ASN][1000 genomes]
rs17553820	0.91[ASN][1000 genomes]
rs17618743	0.89[ASN][1000 genomes]
rs1993507	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2054942	0.95[ASN][1000 genomes]
rs35020519	0.97[ASN][1000 genomes]
rs35390603	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834631	chr3:21612283-21763887	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1007048	chr3:21666807-21865229	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv536516	chr3:21666807-21865229	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv589896	chr3:21692393-21712269	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1840124	chr3:21706503-21712269	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1830276	chr3:21706503-21712422	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21687200-21709600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:21696600-21713400	Weak transcription	Fetal Heart	heart
3	chr3:21696800-21713200	Weak transcription	NHDF-Ad	bronchial
4	chr3:21703800-21709600	Weak transcription	Left Ventricle	heart
5	chr3:21705200-21710000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:21705200-21713800	Weak transcription	Psoas Muscle	Psoas
7	chr3:21707400-21709600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:21707400-21709600	Weak transcription	HMEC	breast
9	chr3:21707400-21713800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:21707400-21719600	Weak transcription	Fetal Lung	lung
11	chr3:21707600-21709600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:21707800-21709600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:21707800-21710800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:21707800-21712400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:21707800-21713800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:21707800-21719800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr3:21708000-21715600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr3:21708200-21713200	Weak transcription	NHLF	lung
19	chr3:21708200-21719800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr3:21709400-21709800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr3:21709400-21709800	Enhancers	Fetal Stomach	stomach
22	chr3:21709400-21710000	Enhancers	Aorta	Aorta

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