Variant report

Variant	rs1490366
Chromosome Location	chr5:145230253-145230254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:145228764..145230631-chr5:145231918..145234409,3	K562	blood:
2	chr5:145213285..145215718-chr5:145228985..145231210,2	K562	blood:
3	chr5:145228302..145230398-chr5:145235405..145237342,3	K562	blood:

Variant related genes	Relation type
ENSG00000186314	Chromatin interaction

rs_ID	r²[population]
rs10053569	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs340051	0.86[EUR][1000 genomes]
rs6892053	0.81[YRI][hapmap]

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145225400-145234400	Weak transcription	Gastric	stomach
2	chr5:145225600-145232600	Weak transcription	Aorta	Aorta
3	chr5:145227000-145235400	Weak transcription	Fetal Heart	heart
4	chr5:145227400-145231400	Weak transcription	Stomach Mucosa	stomach
5	chr5:145228000-145231000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr5:145228600-145234200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr5:145228600-145234200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:145228600-145234200	Weak transcription	HSMM	muscle
9	chr5:145228800-145234000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:145228800-145234000	Weak transcription	NH-A	brain
11	chr5:145228800-145234000	Weak transcription	Osteobl	bone
12	chr5:145228800-145234200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr5:145229000-145231400	Weak transcription	K562	blood
14	chr5:145229000-145234000	Weak transcription	Hela-S3	cervix
15	chr5:145229000-145234000	Weak transcription	HMEC	breast
16	chr5:145229000-145234000	Weak transcription	HUVEC	blood vessel
17	chr5:145229000-145234000	Weak transcription	NHDF-Ad	bronchial
18	chr5:145229000-145234200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:145229000-145234200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:145229200-145234000	Weak transcription	NHEK	skin
21	chr5:145229200-145234200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr5:145229200-145234200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:145230200-145232600	Weak transcription	Small Intestine	intestine

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