Variant report

Variant	rs1491245
Chromosome Location	chr4:100534554-100534555
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100527695..100530044-chr4:100533508..100536218,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1491237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1491244	1.00[AFR][1000 genomes]
rs1491246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17533020	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17533489	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17533517	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2035814	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2035815	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2035816	0.93[AMR][1000 genomes]
rs2903202	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41275715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6532823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6832119	1.00[AFR][1000 genomes]
rs6832927	1.00[AFR][1000 genomes]
rs6837699	0.94[AFR][1000 genomes]
rs6842339	0.94[AFR][1000 genomes]
rs6844547	0.94[AFR][1000 genomes]
rs6845301	0.94[AFR][1000 genomes]
rs745074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs745075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7668586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7693865	1.00[AFR][1000 genomes]
rs7698547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100516400-100546200	Strong transcription	Liver	Liver
2	chr4:100518800-100545200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:100522600-100545800	Strong transcription	Fetal Intestine Large	intestine
4	chr4:100524400-100534800	Strong transcription	Duodenum Mucosa	Duodenum
5	chr4:100526600-100535800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:100532200-100537000	Enhancers	Colon Smooth Muscle	Colon
7	chr4:100532400-100535200	Weak transcription	Fetal Intestine Small	intestine
8	chr4:100532600-100534800	Enhancers	Rectal Smooth Muscle	rectum
9	chr4:100532600-100535600	Weak transcription	Fetal Lung	lung
10	chr4:100532600-100535800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:100532600-100536400	Weak transcription	Fetal Muscle Leg	muscle
12	chr4:100532800-100545200	Weak transcription	Aorta	Aorta
13	chr4:100533400-100535000	Strong transcription	HepG2	liver
14	chr4:100533600-100534800	Enhancers	Pancreas	Pancrea
15	chr4:100533800-100534800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:100533800-100535000	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr4:100534200-100535000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:100534200-100535600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr4:100534200-100535800	Weak transcription	Ovary	ovary
20	chr4:100534200-100536400	Weak transcription	Psoas Muscle	Psoas
21	chr4:100534400-100535600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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