Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100549968..100552263-chr4:100558300..100560631,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10516447	1.00[YRI][hapmap]
rs1491237	0.94[AFR][1000 genomes]
rs1491244	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1491245	0.94[AFR][1000 genomes]
rs1491246	0.94[AFR][1000 genomes]
rs17533020	0.88[AFR][1000 genomes]
rs17533489	0.88[AFR][1000 genomes]
rs17533517	0.88[AFR][1000 genomes]
rs2035814	0.88[AFR][1000 genomes]
rs2035815	0.83[AFR][1000 genomes]
rs2903202	0.88[AFR][1000 genomes]
rs41275715	0.94[AFR][1000 genomes]
rs6532823	0.94[AFR][1000 genomes]
rs6832119	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6832927	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6837699	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6842339	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6845301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs745074	0.94[AFR][1000 genomes]
rs745075	0.94[AFR][1000 genomes]
rs7668586	0.94[AFR][1000 genomes]
rs7693865	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7698547	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100538200-100556000	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:100544000-100553200	Weak transcription	Psoas Muscle	Psoas
3	chr4:100546000-100561200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr4:100546200-100553800	Weak transcription	Liver	Liver
5	chr4:100551000-100551800	Enhancers	NHEK	skin
6	chr4:100551400-100555200	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr4:100551600-100552800	Enhancers	Fetal Intestine Small	intestine
8	chr4:100551600-100554000	Weak transcription	HMEC	breast

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