Variant report

Variant	rs1491624
Chromosome Location	chr15:40070901-40070902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:39979023..39981258-chr15:40069325..40071839,2	K562	blood:
2	chr15:40058706..40061655-chr15:40069031..40071989,2	MCF-7	breast:
3	chr15:40069274..40072171-chr15:40072532..40074529,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1021410	0.87[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1021411	0.83[JPT][hapmap]
rs1027232	0.81[CHB][hapmap]
rs10520151	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs11858148	0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs12437837	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs12440567	0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs12899969	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs12903306	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs12907894	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs12916159	0.82[EUR][1000 genomes]
rs1565559	0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1565561	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16969789	0.81[JPT][hapmap]
rs16969802	0.82[JPT][hapmap]
rs17643920	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs1844863	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2029584	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2171311	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs2171312	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs2576930	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs2576931	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs2631717	0.82[ASN][1000 genomes]
rs28450006	0.96[ASN][1000 genomes]
rs28538495	0.83[ASN][1000 genomes]
rs28884199	0.83[ASN][1000 genomes]
rs28896916	0.83[ASN][1000 genomes]
rs34185057	0.82[EUR][1000 genomes]
rs34320375	0.98[ASN][1000 genomes]
rs34439198	0.81[EUR][1000 genomes]
rs34937456	0.82[EUR][1000 genomes]
rs35652496	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4115216	0.86[CEU][hapmap]
rs4924386	0.82[EUR][1000 genomes]
rs4924387	0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs4924388	0.83[ASN][1000 genomes]
rs4924390	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4924392	0.88[ASN][1000 genomes]
rs55639610	0.96[ASN][1000 genomes]
rs59434895	0.81[ASN][1000 genomes]
rs60431166	0.81[ASN][1000 genomes]
rs61695850	0.81[ASN][1000 genomes]
rs62004778	0.82[EUR][1000 genomes]
rs62004808	0.98[ASN][1000 genomes]
rs7179742	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7179838	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7180846	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs8026892	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40059400-40074400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:40063800-40074000	Weak transcription	Brain Angular Gyrus	brain
3	chr15:40064000-40074000	Weak transcription	Brain Anterior Caudate	brain
4	chr15:40064200-40073800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:40064400-40074200	Weak transcription	Osteobl	bone
6	chr15:40067400-40071600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:40067400-40071800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr15:40067600-40073800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:40068000-40073800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr15:40068200-40073800	Weak transcription	Dnd41	blood
11	chr15:40069800-40074000	Weak transcription	GM12878-XiMat	blood
12	chr15:40070000-40071600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:40070000-40074200	Weak transcription	NHDF-Ad	bronchial
14	chr15:40070200-40071600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:40070200-40074000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:40070200-40074200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr15:40070200-40074200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr15:40070200-40074200	Weak transcription	HSMMtube	muscle
19	chr15:40070200-40074400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:40070400-40073800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:40070400-40073800	Weak transcription	HepG2	liver
22	chr15:40070400-40074000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr15:40070400-40074200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr15:40070400-40074200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr15:40070400-40074200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:40070400-40074200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:40070400-40074200	Weak transcription	NH-A	brain
28	chr15:40070400-40074400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr15:40070600-40071800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:40070600-40073800	Weak transcription	K562	blood
31	chr15:40070600-40074000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr15:40070600-40074200	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr15:40070600-40074200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:40070600-40074400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr15:40070800-40071000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:40070800-40072200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:40070800-40073600	Weak transcription	Primary hematopoietic stem cells	blood
38	chr15:40070800-40074200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr15:40070800-40074200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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