Variant report

Variant	rs16969802
Chromosome Location	chr15:40050362-40050363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1021410	0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs1027232	0.90[JPT][hapmap]
rs11858148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12437837	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12440567	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1491624	0.82[JPT][hapmap]
rs1565559	0.81[JPT][hapmap]
rs1565561	0.81[JPT][hapmap]
rs16969621	0.85[JPT][hapmap]
rs16969789	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1844863	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs1906166	0.96[ASN][1000 genomes]
rs2029584	0.80[JPT][hapmap]
rs2171312	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs28538495	0.94[ASN][1000 genomes]
rs28884199	0.94[ASN][1000 genomes]
rs28896916	0.94[ASN][1000 genomes]
rs34320375	0.82[ASN][1000 genomes]
rs4923838	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs4924379	0.85[JPT][hapmap]
rs4924387	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4924388	0.94[ASN][1000 genomes]
rs4924390	0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs4924392	0.89[ASN][1000 genomes]
rs59180773	0.82[ASN][1000 genomes]
rs59434895	0.98[ASN][1000 genomes]
rs60431166	0.98[ASN][1000 genomes]
rs61695850	0.98[ASN][1000 genomes]
rs62004808	0.82[ASN][1000 genomes]
rs7179742	0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs7179838	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs7180846	0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs8032864	0.86[JPT][hapmap]
rs8034520	0.85[JPT][hapmap]
rs8034550	0.86[JPT][hapmap]
rs8035291	0.83[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40040800-40063400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:40045600-40054400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:40047800-40053600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:40048600-40050400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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