Variant report

Variant	rs1906166
Chromosome Location	chr15:40041485-40041486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1021410	0.84[ASN][1000 genomes]
rs11858148	0.98[ASN][1000 genomes]
rs12437837	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12440567	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16952186	0.83[ASN][1000 genomes]
rs16969621	0.82[ASN][1000 genomes]
rs16969789	1.00[ASN][1000 genomes]
rs16969802	0.96[ASN][1000 genomes]
rs16969808	0.94[AFR][1000 genomes]
rs16969811	0.94[AFR][1000 genomes]
rs16969823	0.92[AFR][1000 genomes]
rs1844863	0.81[ASN][1000 genomes]
rs2171312	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28538495	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28861150	0.90[AFR][1000 genomes]
rs28884199	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28896916	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34320375	0.81[ASN][1000 genomes]
rs41424848	0.88[AFR][1000 genomes]
rs4923838	0.84[ASN][1000 genomes]
rs4924383	0.83[ASN][1000 genomes]
rs4924387	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4924388	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4924390	0.81[ASN][1000 genomes]
rs4924392	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59180773	0.85[ASN][1000 genomes]
rs59434895	0.98[ASN][1000 genomes]
rs60431166	0.98[ASN][1000 genomes]
rs61620785	0.82[ASN][1000 genomes]
rs61695850	0.98[ASN][1000 genomes]
rs62004808	0.81[ASN][1000 genomes]
rs7173020	0.83[ASN][1000 genomes]
rs7179742	0.81[ASN][1000 genomes]
rs7179838	0.81[ASN][1000 genomes]
rs7180846	0.81[ASN][1000 genomes]
rs72727079	0.94[AFR][1000 genomes]
rs72727081	0.94[AFR][1000 genomes]
rs72727083	0.94[AFR][1000 genomes]
rs72727084	0.94[AFR][1000 genomes]
rs72727092	0.88[AFR][1000 genomes]
rs8024166	0.83[ASN][1000 genomes]
rs8035291	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40035600-40050000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:40039400-40049000	Weak transcription	HUVEC	blood vessel
3	chr15:40040800-40044800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:40040800-40063400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:40041000-40041600	Enhancers	A549	lung
6	chr15:40041200-40044400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:40041200-40044800	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links