Variant report

Variant	rs61620785
Chromosome Location	chr15:39995277-39995278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:39989762..39992879-chr15:39994931..39996889,3	K562	blood:
2	chr12:56989910..56991430-chr15:39994772..39997768,2	K562	blood:
3	chr15:39987378..39989028-chr15:39993423..39995543,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10520144	0.87[EUR][1000 genomes]
rs16952186	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16969621	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16969789	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1906166	0.82[ASN][1000 genomes]
rs4923838	0.95[ASN][1000 genomes]
rs4924379	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4924383	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs59180773	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59434895	0.92[AMR][1000 genomes]
rs60431166	0.92[AMR][1000 genomes]
rs61695850	0.92[AMR][1000 genomes]
rs7173020	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7183539	0.87[EUR][1000 genomes]
rs72727050	0.89[ASN][1000 genomes]
rs8024166	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8032864	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8034520	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8034550	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8035291	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8035986	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs951374	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39985600-39996600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr15:39985800-39996400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr15:39985800-39996600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:39988000-39996600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:39991200-39996600	Weak transcription	Placenta	Placenta
6	chr15:39992400-39996600	Weak transcription	Osteobl	bone
7	chr15:39992800-39996600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:39993000-39996600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:39993000-39996600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:39993000-39996600	Weak transcription	NHDF-Ad	bronchial
11	chr15:39993200-39996800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:39994200-39999400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:39994200-39999600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:39994600-39996200	Weak transcription	K562	blood
15	chr15:39995000-39996800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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