Variant report

Variant	rs7173020
Chromosome Location	chr15:40023034-40023035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40022385..40024167-chr15:40025741..40027363,2	K562	blood:
2	chr15:40021204..40023885-chr15:40025697..40027241,2	K562	blood:
3	chr15:40021277..40023471-chr15:40056551..40058310,2	MCF-7	breast:
4	chr15:40022589..40023089-chr6:3118787..3119378,2	NB4	blood:

Variant related genes	Relation type
ENSG00000137274	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11858148	0.81[ASN][1000 genomes]
rs12437837	0.81[ASN][1000 genomes]
rs16952186	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16969621	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16969789	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1906166	0.83[ASN][1000 genomes]
rs4923838	0.95[ASN][1000 genomes]
rs4924379	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4924381	0.84[AMR][1000 genomes]
rs4924383	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924387	0.81[ASN][1000 genomes]
rs59180773	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59434895	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs60431166	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61620785	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61695850	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72727050	0.89[ASN][1000 genomes]
rs8024166	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8032864	0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8034520	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8034550	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8035291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8035986	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs951374	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40021800-40038000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:40022400-40023200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:40022400-40023200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr15:40022400-40023200	Enhancers	HepG2	liver
5	chr15:40022600-40023200	Enhancers	Fetal Intestine Small	intestine
6	chr15:40022600-40023200	Enhancers	K562	blood
7	chr15:40022800-40023200	Enhancers	Fetal Intestine Large	intestine
8	chr15:40022800-40023200	Enhancers	Pancreas	Pancrea
9	chr15:40022800-40023400	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr15:40023000-40023200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:40023000-40023200	Flanking Active TSS	A549	lung

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