Variant report

Variant	rs59180773
Chromosome Location	chr15:40002005-40002006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40001984..40003640-chr15:40006092..40009077,2	K562	blood:
2	chr15:39992994..39994897-chr15:40000779..40002890,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10520144	0.87[EUR][1000 genomes]
rs11858148	0.83[ASN][1000 genomes]
rs12437837	0.83[ASN][1000 genomes]
rs16952186	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16969621	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16969789	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16969802	0.82[ASN][1000 genomes]
rs1906166	0.85[ASN][1000 genomes]
rs4923838	0.99[ASN][1000 genomes]
rs4924379	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4924383	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4924387	0.83[ASN][1000 genomes]
rs59434895	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60431166	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61620785	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61695850	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7173020	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7183539	0.93[EUR][1000 genomes]
rs72727050	0.92[ASN][1000 genomes]
rs8024166	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8032864	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8034520	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8034550	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8035291	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8035986	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs951374	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39997600-40002400	Weak transcription	Osteobl	bone
2	chr15:39999800-40004400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:40000200-40005400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:40001200-40004800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:40001200-40011800	Weak transcription	NHDF-Ad	bronchial

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