Variant report

Variant	rs1491753
Chromosome Location	chr3:68402933-68402934
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1388500	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs1388505	0.89[CHB][hapmap];0.81[AMR][1000 genomes]
rs1510354	0.90[JPT][hapmap]
rs262210	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs262211	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs262215	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs262218	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs262248	0.89[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs262250	0.82[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590562	chr3:68393781-68422687	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	nsv590563	chr3:68402933-68422687	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1491753	LMOD3	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68401800-68403200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr3:68402200-68403200	Enhancers	Adipose Nuclei	Adipose
3	chr3:68402800-68403200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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