Variant report

Variant	rs1388505
Chromosome Location	chr3:68373086-68373087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1388500	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1491753	0.89[CHB][hapmap];0.81[AMR][1000 genomes]
rs1510354	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs2220667	0.83[CHB][hapmap]
rs262210	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs262211	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs262215	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs262218	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs262248	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs262250	0.94[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1010992	chr3:68353191-68388825	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68372000-68374600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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