Variant report
| Variant | rs2220667 |
|---|---|
| Chromosome Location | chr3:68419898-68419899 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs1388500 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs1388505 | 0.83[CHB][hapmap] |
| rs1510354 | 0.81[JPT][hapmap] |
| rs262210 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs262211 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs262215 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs262218 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs262248 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834721 | chr3:68365963-68526394 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv590562 | chr3:68393781-68422687 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv590563 | chr3:68402933-68422687 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
