Variant report

Variant	rs1491975
Chromosome Location	chr3:151183197-151183198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151176832..151178864-chr3:151180710..151183596,2	K562	blood:
2	chr3:151182500..151185282-chr3:151257399..151260037,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1491976	0.95[EUR][1000 genomes]
rs2172248	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.88[ASN][1000 genomes]
rs4234322	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4435614	0.94[CHB][hapmap]
rs4680440	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4680442	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4680443	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs6769246	0.82[ASN][1000 genomes]
rs6774093	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6798252	0.93[CHB][hapmap]
rs7610769	0.87[ASN][1000 genomes]
rs7619322	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs7621591	1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.83[TSI][hapmap];0.87[ASN][1000 genomes]
rs9289838	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs9812989	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs9817904	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9824609	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs9843590	0.81[CEU][hapmap]
rs9858311	0.94[EUR][1000 genomes]
rs9871952	1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs9877298	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1000355	chr3:151108859-151243835	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv877649	chr3:151147968-151236562	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv877650	chr3:151174010-151314449	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151179200-151194200	Weak transcription	Ovary	ovary

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