Variant report

Variant	rs1492887
Chromosome Location	chr12:44623444-44623445
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:44621635..44624331-chr12:44625593..44628194,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11609283	0.93[ASN][1000 genomes]
rs11609568	0.93[ASN][1000 genomes]
rs11613444	0.93[ASN][1000 genomes]
rs1527316	0.93[ASN][1000 genomes]
rs1527317	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094057	0.85[ASN][1000 genomes]
rs17094127	1.00[ASN][1000 genomes]
rs17094138	1.00[ASN][1000 genomes]
rs17094142	1.00[ASN][1000 genomes]
rs17094168	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094173	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094228	0.93[ASN][1000 genomes]
rs17094238	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094242	0.81[ASN][1000 genomes]
rs17094244	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094257	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094260	0.93[ASN][1000 genomes]
rs17094264	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094272	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094276	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094278	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094282	0.93[ASN][1000 genomes]
rs17094291	0.93[ASN][1000 genomes]
rs17094292	0.93[ASN][1000 genomes]
rs17094299	0.93[ASN][1000 genomes]
rs17094304	0.93[ASN][1000 genomes]
rs17094306	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094313	0.93[ASN][1000 genomes]
rs17094328	0.93[ASN][1000 genomes]
rs17094330	0.93[ASN][1000 genomes]
rs17094333	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094338	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094341	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094351	1.00[ASN][1000 genomes]
rs17094358	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094374	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2012087	1.00[ASN][1000 genomes]
rs28397962	0.93[ASN][1000 genomes]
rs55645887	0.93[ASN][1000 genomes]
rs55747421	0.93[ASN][1000 genomes]
rs55874183	0.93[ASN][1000 genomes]
rs55991202	0.93[ASN][1000 genomes]
rs58450697	0.93[ASN][1000 genomes]
rs59136483	0.93[ASN][1000 genomes]
rs59704299	0.93[ASN][1000 genomes]
rs59957474	0.93[ASN][1000 genomes]
rs60461380	0.93[ASN][1000 genomes]
rs61228557	0.93[ASN][1000 genomes]
rs7308476	0.93[ASN][1000 genomes]
rs73100817	0.93[ASN][1000 genomes]
rs73100841	0.93[ASN][1000 genomes]
rs73100848	0.86[ASN][1000 genomes]
rs73102910	0.93[ASN][1000 genomes]
rs73102925	0.93[ASN][1000 genomes]
rs73102927	0.93[ASN][1000 genomes]
rs73102932	0.93[ASN][1000 genomes]
rs73102937	0.93[ASN][1000 genomes]
rs73102938	0.93[ASN][1000 genomes]
rs7311714	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832393	chr12:44529406-44692414	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44612000-44655600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:44622000-44633800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:44623400-44624600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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