Variant report

Variant	rs17094168
Chromosome Location	chr12:44552036-44552037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:44550647..44552515-chr12:44553138..44554864,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11609283	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11609568	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs11613444	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11830719	1.00[JPT][hapmap]
rs1492887	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1527316	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs1527317	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094057	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17094063	1.00[JPT][hapmap]
rs17094102	1.00[JPT][hapmap]
rs17094110	1.00[JPT][hapmap]
rs17094127	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17094138	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17094142	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17094173	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094228	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17094238	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094242	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs17094244	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094257	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094260	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17094264	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094272	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094276	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094278	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094282	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17094291	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs17094292	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs17094299	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17094304	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17094306	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094313	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17094328	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs17094330	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs17094333	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094336	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17094338	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094341	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094351	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17094358	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094374	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17121305	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2012087	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28397962	0.93[ASN][1000 genomes]
rs55645887	0.93[ASN][1000 genomes]
rs55747421	0.93[ASN][1000 genomes]
rs55874183	0.93[ASN][1000 genomes]
rs55991202	0.93[ASN][1000 genomes]
rs58450697	0.93[ASN][1000 genomes]
rs59136483	0.93[ASN][1000 genomes]
rs59704299	0.93[ASN][1000 genomes]
rs59957474	0.93[ASN][1000 genomes]
rs60461380	0.93[ASN][1000 genomes]
rs61228557	0.93[ASN][1000 genomes]
rs7137787	1.00[JPT][hapmap]
rs7298835	1.00[JPT][hapmap]
rs7308476	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs73100817	0.93[ASN][1000 genomes]
rs73100841	0.93[ASN][1000 genomes]
rs73100848	0.86[ASN][1000 genomes]
rs73102910	0.93[ASN][1000 genomes]
rs73102925	0.93[ASN][1000 genomes]
rs73102927	0.93[ASN][1000 genomes]
rs73102932	0.93[ASN][1000 genomes]
rs73102937	0.93[ASN][1000 genomes]
rs73102938	0.93[ASN][1000 genomes]
rs7311714	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7967957	1.00[JPT][hapmap]
rs9738149	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832391	chr12:44394137-44552555	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832393	chr12:44529406-44692414	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44511400-44605800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:44530800-44573200	Weak transcription	Pancreas	Pancrea
3	chr12:44534800-44573000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:44539600-44553800	Weak transcription	Aorta	Aorta
5	chr12:44547000-44554200	Enhancers	Fetal Heart	heart
6	chr12:44547200-44554400	Weak transcription	Left Ventricle	heart
7	chr12:44548200-44556600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr12:44548800-44552800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr12:44549800-44552600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:44549800-44552600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr12:44551800-44554000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:44551800-44554000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr12:44552000-44552200	Enhancers	Right Ventricle	heart
14	chr12:44552000-44553600	Enhancers	HepG2	liver
15	chr12:44552000-44554000	Enhancers	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links