Variant report

Variant	rs149364781
Chromosome Location	chr11:85434518-85434519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3AK20	chr11:85433813-85434727	MCF-7	breast:	n/a	n/a
2	FOXM1	chr11:85433882-85434669	MCF-7	breast:	n/a	n/a
3	JUND	chr11:85433922-85434675	MCF-7	breast:	n/a	chr11:85434365-85434372 chr11:85434363-85434373 chr11:85434363-85434372 chr11:85434364-85434373 chr11:85434362-85434373
4	TCF12	chr11:85433832-85434719	MCF-7	breast:	n/a	n/a
5	FOS	chr11:85434046-85434677	MCF10A-Er-Src	breast:	n/a	chr11:85434365-85434372 chr11:85434363-85434373 chr11:85434363-85434372 chr11:85434364-85434373
6	FOSL1	chr11:85434094-85434616	HCT-116	colon:	n/a	chr11:85434365-85434372 chr11:85434363-85434373 chr11:85434363-85434372 chr11:85434364-85434373
7	HDAC2	chr11:85434012-85434606	MCF-7	breast:	n/a	n/a
8	NR2F2	chr11:85433947-85434667	MCF-7	breast:	n/a	n/a
9	GABPA	chr11:85434008-85434631	MCF-7	breast:	n/a	n/a
10	TCF12	chr11:85433800-85434614	MCF-7	breast:	n/a	n/a
11	MAX	chr11:85434013-85434625	HCT-116	colon:	n/a	n/a
12	GATA3	chr11:85433656-85434833	MCF-7	breast:	n/a	chr11:85434732-85434743 chr11:85433993-85434002 chr11:85433986-85434007 chr11:85433989-85434005
13	JUND	chr11:85433891-85434657	MCF-7	breast:	n/a	chr11:85434365-85434372 chr11:85434363-85434373 chr11:85434363-85434372 chr11:85434364-85434373 chr11:85434362-85434373
14	FOSL2	chr11:85433912-85434643	MCF-7	breast:	n/a	chr11:85434365-85434372 chr11:85434363-85434373 chr11:85434363-85434372 chr11:85434364-85434373
15	POLR2A	chr11:85434012-85434524	MCF-7	breast:	n/a	n/a
16	HA-E2F1	chr11:85433987-85434575	MCF-7	breast:	n/a	chr11:85434236-85434247 chr11:85434240-85434247
17	SRF	chr11:85434039-85434663	MCF-7	breast:	n/a	chr11:85434607-85434620 chr11:85434343-85434361
18	FOXM1	chr11:85433893-85434576	MCF-7	breast:	n/a	n/a
19	JUND	chr11:85434030-85434719	HCT-116	colon:	n/a	chr11:85434365-85434372 chr11:85434363-85434373 chr11:85434363-85434372 chr11:85434364-85434373 chr11:85434362-85434373
20	SP1	chr11:85433983-85434736	HCT-116	colon:	n/a	n/a
21	EGR1	chr11:85433928-85434641	HCT-116	colon:	n/a	n/a
22	CBX3	chr11:85433968-85434612	HCT-116	colon:	n/a	n/a
23	SRF	chr11:85433910-85434724	MCF-7	breast:	n/a	chr11:85434607-85434620 chr11:85434343-85434361
24	SIN3AK20	chr11:85433759-85434699	MCF-7	breast:	n/a	n/a
25	EGR1	chr11:85433977-85434611	HCT-116	colon:	n/a	n/a
26	EP300	chr11:85433930-85434678	MCF-7	breast:	n/a	chr11:85434121-85434135 chr11:85434363-85434372
27	EP300	chr11:85433835-85434605	MCF-7	breast:	n/a	chr11:85433844-85433858 chr11:85434121-85434135 chr11:85434363-85434372
28	MAX	chr11:85433953-85434672	MCF-7	breast:	n/a	n/a
29	CEBPB	chr11:85433865-85434608	MCF-7	breast:	n/a	chr11:85434072-85434085 chr11:85434073-85434084 chr11:85434074-85434083
30	FOSL2	chr11:85433926-85434592	MCF-7	breast:	n/a	chr11:85434365-85434372 chr11:85434363-85434373 chr11:85434363-85434372 chr11:85434364-85434373
31	ZNF217	chr11:85433908-85434557	MCF-7	breast:	n/a	n/a
32	MAX	chr11:85434076-85434574	MCF-7	breast:	n/a	n/a
33	SP1	chr11:85434007-85434669	HCT-116	colon:	n/a	n/a
34	NR2F2	chr11:85433812-85434702	MCF-7	breast:	n/a	n/a
35	TEAD4	chr11:85433884-85434549	MCF-7	breast:	n/a	n/a
36	RAD21	chr11:85433972-85434598	MCF-7	breast:	n/a	chr11:85434353-85434366
37	GATA3	chr11:85433834-85434636	MCF-7	breast:	n/a	chr11:85433993-85434002 chr11:85433986-85434007 chr11:85433989-85434005
38	FOS	chr11:85433977-85434551	MCF10A-Er-Src	breast:	n/a	chr11:85434365-85434372 chr11:85434363-85434373 chr11:85434363-85434372 chr11:85434364-85434373
39	CBX3	chr11:85434014-85434630	HCT-116	colon:	n/a	n/a
40	FOS	chr11:85433958-85434550	MCF10A-Er-Src	breast:	n/a	chr11:85434365-85434372 chr11:85434363-85434373 chr11:85434363-85434372 chr11:85434364-85434373
41	FOSL1	chr11:85433936-85434707	HCT-116	colon:	n/a	chr11:85434365-85434372 chr11:85434363-85434373 chr11:85434363-85434372 chr11:85434364-85434373
42	EGR1	chr11:85433968-85434598	MCF-7	breast:	n/a	n/a
43	CEBPB	chr11:85433879-85434592	MCF-7	breast:	n/a	chr11:85434072-85434085 chr11:85434073-85434084 chr11:85434074-85434083
44	FOS	chr11:85434176-85434518	MCF10A-Er-Src	breast:	n/a	chr11:85434365-85434372 chr11:85434363-85434373 chr11:85434363-85434372 chr11:85434364-85434373
45	JUND	chr11:85434032-85434657	HCT-116	colon:	n/a	chr11:85434365-85434372 chr11:85434363-85434373 chr11:85434363-85434372 chr11:85434364-85434373 chr11:85434362-85434373
46	PML	chr11:85433971-85434542	MCF-7	breast:	n/a	chr11:85434168-85434176 chr11:85434365-85434374
47	HDAC2	chr11:85433910-85434640	MCF-7	breast:	n/a	n/a
48	TEAD4	chr11:85433905-85434567	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:85432781..85434564-chr11:85442681..85445528,2	MCF-7	breast:
2	chr11:85433923..85435734-chr11:85518099..85520604,2	MCF-7	breast:
3	chr11:85427809..85429920-chr11:85433567..85435878,3	MCF-7	breast:
4	chr11:85406368..85408240-chr11:85432667..85435313,3	MCF-7	breast:
5	chr11:85374651..85376629-chr11:85434195..85435833,2	MCF-7	breast:
6	chr11:85338344..85340985-chr11:85434050..85436369,2	K562	blood:
7	chr11:85434348..85438681-chr11:85520824..85523815,4	MCF-7	breast:
8	chr11:85414305..85416177-chr11:85432869..85434542,2	MCF-7	breast:
9	chr11:85433132..85435744-chr11:85522806..85525692,2	MCF-7	breast:
10	chr11:85434008..85435703-chr11:85538641..85540808,2	MCF-7	breast:

Variant related genes	Relation type
SYTL2	TF binding region
ENSG00000137504	Chromatin interaction
ENSG00000150672	Chromatin interaction
ENSG00000137501	Chromatin interaction
ENSG00000171204	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv468768	chr11:85395180-85436352	Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv555632	chr11:85395180-85436352	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv832222	chr11:85405712-85603981	Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv898050	chr11:85406915-85499290	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1052123	chr11:85425856-85471132	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv555633	chr11:85426330-85473883	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1036110	chr11:85429074-85471132	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1054027	chr11:85429074-85477283	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv3471508	chr11:85429687-85472395	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	esv3471519	chr11:85429687-85472395	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv555634	chr11:85430397-85464922	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv555635	chr11:85430397-85470893	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv555636	chr11:85431886-85465179	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv1042192	chr11:85433687-85464922	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv1039118	chr11:85433687-85468605	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
20	nsv1039830	chr11:85433687-85470589	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv1047001	chr11:85433687-85470941	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
22	nsv1042942	chr11:85433687-85471132	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
23	nsv1052732	chr11:85434057-85468605	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
24	nsv1048844	chr11:85434057-85470941	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
25	nsv1051644	chr11:85434057-85471132	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85397200-85438600	Weak transcription	Colonic Mucosa	Colon
2	chr11:85412000-85436800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr11:85412000-85438000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr11:85417600-85453000	Weak transcription	Gastric	stomach
5	chr11:85418400-85436400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:85422600-85448600	Weak transcription	Fetal Intestine Large	intestine
7	chr11:85422800-85448200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr11:85424000-85448600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:85430200-85437800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:85430400-85436000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:85430400-85436600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:85430400-85437400	Weak transcription	Stomach Mucosa	stomach
13	chr11:85430400-85459000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:85430400-85480400	Weak transcription	Aorta	Aorta
15	chr11:85430600-85437200	Weak transcription	Fetal Kidney	kidney
16	chr11:85430600-85447000	Weak transcription	Ovary	ovary
17	chr11:85430800-85435200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:85430800-85445000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:85430800-85447200	Weak transcription	Fetal Stomach	stomach
20	chr11:85430800-85448800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:85430800-85459000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:85431000-85436400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:85431000-85445200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:85431200-85436200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:85431200-85436200	Weak transcription	NH-A	brain
26	chr11:85431200-85436600	Weak transcription	Osteobl	bone
27	chr11:85431400-85436400	Weak transcription	A549	lung
28	chr11:85431400-85436600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:85431400-85451600	Weak transcription	HSMMtube	muscle
30	chr11:85431600-85436600	Weak transcription	HSMM	muscle
31	chr11:85431800-85435400	Weak transcription	NHLF	lung
32	chr11:85431800-85436600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:85431800-85437600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:85431800-85466600	Weak transcription	Brain Substantia Nigra	brain
35	chr11:85432000-85436600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr11:85432000-85436800	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr11:85432000-85460800	Weak transcription	Fetal Muscle Leg	muscle
38	chr11:85432200-85448400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr11:85433000-85436000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:85433600-85435400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr11:85433800-85434600	Enhancers	HMEC	breast
42	chr11:85433800-85434800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:85433800-85448600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:85434000-85434600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:85434000-85434600	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr11:85434000-85439400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr11:85434200-85434600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:85434200-85434600	Enhancers	NHEK	skin
49	chr11:85434200-85439800	Strong transcription	Primary T cells from cord blood	blood
50	chr11:85434400-85435200	Weak transcription	H1 Cell Line	embryonic stem cell

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