Variant report
| Variant | rs1493821 |
|---|---|
| Chromosome Location | chr12:74991077-74991078 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1389489 | 1.00[YRI][hapmap] |
| rs1493807 | 1.00[YRI][hapmap] |
| rs1563930 | 1.00[YRI][hapmap] |
| rs1602952 | 1.00[AFR][1000 genomes] |
| rs1873987 | 1.00[YRI][hapmap] |
| rs1873988 | 1.00[YRI][hapmap] |
| rs2252250 | 1.00[YRI][hapmap] |
| rs2365930 | 1.00[AFR][1000 genomes] |
| rs2605370 | 1.00[AFR][1000 genomes] |
| rs2605379 | 1.00[YRI][hapmap] |
| rs2605380 | 1.00[YRI][hapmap] |
| rs2613877 | 0.81[AFR][1000 genomes] |
| rs2613880 | 1.00[YRI][hapmap] |
| rs2613899 | 1.00[YRI][hapmap] |
| rs2641465 | 1.00[YRI][hapmap] |
| rs2641491 | 1.00[AFR][1000 genomes] |
| rs2641492 | 1.00[AFR][1000 genomes] |
| rs2641505 | 1.00[AFR][1000 genomes] |
| rs588875 | 1.00[YRI][hapmap] |
| rs590166 | 1.00[YRI][hapmap] |
| rs596999 | 1.00[YRI][hapmap] |
| rs625531 | 1.00[YRI][hapmap] |
| rs634882 | 1.00[AFR][1000 genomes] |
| rs694314 | 1.00[YRI][hapmap] |
| rs822806 | 1.00[YRI][hapmap] |
| rs822809 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1039468 | chr12:74080586-75000246 | Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv899293 | chr12:74835107-74995760 | Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:74990000-74996800 | Weak transcription | Stomach Mucosa | stomach |
