Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10505348	0.80[CHB][hapmap]
rs11573829	0.80[CHB][hapmap]
rs11992136	0.81[CHB][hapmap]
rs1485289	0.80[CHB][hapmap]
rs1872426	0.80[CHB][hapmap]
rs1874034	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1905786	0.80[CHB][hapmap]
rs1908220	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1948467	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2062375	0.81[CHB][hapmap]
rs2087998	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3103971	0.81[ASN][1000 genomes]
rs3133581	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3133585	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3133589	0.84[ASN][1000 genomes]
rs3134077	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4242592	0.81[CHB][hapmap]
rs4319131	0.81[CHB][hapmap]
rs4876876	0.80[CHB][hapmap]
rs6415470	0.81[CHB][hapmap]
rs6469788	0.84[CHB][hapmap]
rs6469789	0.81[CHB][hapmap]
rs7006553	0.81[CHB][hapmap]
rs7010267	0.86[CHB][hapmap]
rs7463176	0.81[CHB][hapmap]
rs9969672	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	esv3398543	chr8:119844521-119847619	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119837800-119848200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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