Variant report

Variant	rs2087998
Chromosome Location	chr8:119852446-119852447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10505348	0.80[CHB][hapmap];0.81[CHD][hapmap]
rs11573829	0.80[CHB][hapmap];0.81[CHD][hapmap]
rs11573885	0.80[CHB][hapmap]
rs11992136	0.80[CHB][hapmap]
rs1353171	0.84[ASN][1000 genomes]
rs1485289	0.80[CHB][hapmap];0.81[CHD][hapmap]
rs1493934	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1872426	0.80[CHB][hapmap];0.81[CHD][hapmap]
rs1874034	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1905786	0.80[CHB][hapmap];0.81[CHD][hapmap]
rs1908220	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1948467	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2035979	0.85[ASN][1000 genomes]
rs2062375	0.80[CHB][hapmap]
rs2101752	0.86[ASN][1000 genomes]
rs2326045	0.85[ASN][1000 genomes]
rs2326048	0.82[ASN][1000 genomes]
rs3103968	0.85[ASN][1000 genomes]
rs3103969	0.86[ASN][1000 genomes]
rs3103970	0.85[ASN][1000 genomes]
rs3103971	0.87[ASN][1000 genomes]
rs3103995	0.85[ASN][1000 genomes]
rs3133581	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3133585	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3133589	0.92[ASN][1000 genomes]
rs3134077	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3134087	0.86[ASN][1000 genomes]
rs4242592	0.80[CHB][hapmap]
rs4319131	0.80[CHB][hapmap]
rs4876876	0.80[CHB][hapmap]
rs6415470	0.80[CHB][hapmap]
rs6469788	0.83[CHB][hapmap]
rs6469789	0.80[CHB][hapmap]
rs7006553	0.80[CHB][hapmap]
rs7010267	0.86[CHB][hapmap];0.81[CHD][hapmap]
rs7463176	0.80[CHB][hapmap]
rs7464496	0.80[CHB][hapmap]
rs9969672	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119850200-119853400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:119850400-119855400	Weak transcription	NH-A	brain
3	chr8:119850400-119855600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:119850400-119855600	Weak transcription	HSMM	muscle
5	chr8:119850400-119855600	Weak transcription	Osteobl	bone
6	chr8:119850400-119856200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:119852200-119855200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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