Variant report

Variant	rs2035979
Chromosome Location	chr8:119872439-119872440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119870985..119873020-chr8:119885150..119887019,2	MCF-7	breast:
2	chr8:119858424..119862696-chr8:119871744..119874668,4	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10101385	0.80[ASN][1000 genomes]
rs10505348	0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[YRI][hapmap]
rs10955908	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11573829	0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[YRI][hapmap]
rs11573885	0.90[CHB][hapmap]
rs11992136	0.90[CHB][hapmap]
rs13250753	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13277230	0.81[ASN][1000 genomes]
rs13439134	0.81[ASN][1000 genomes]
rs1353171	0.98[ASN][1000 genomes]
rs1485289	0.90[CHB][hapmap];0.87[CHD][hapmap]
rs1872426	0.90[CHB][hapmap];0.88[CHD][hapmap]
rs1874034	0.87[JPT][hapmap]
rs1905786	0.90[CHB][hapmap];0.88[CHD][hapmap]
rs2035977	0.80[EUR][1000 genomes]
rs2062375	0.90[CHB][hapmap]
rs2062377	0.90[CHB][hapmap]
rs2073618	0.84[CHB][hapmap]
rs2087998	0.85[ASN][1000 genomes]
rs2101752	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2326045	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2326048	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3103968	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3103969	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3103970	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3103971	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3103995	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3133589	0.90[ASN][1000 genomes]
rs3134087	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4242592	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs4319131	0.90[CHB][hapmap]
rs4355801	0.80[ASN][1000 genomes]
rs4407910	0.81[ASN][1000 genomes]
rs4876876	0.90[CHB][hapmap];0.84[CHD][hapmap]
rs6415470	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs6469788	0.89[CHB][hapmap]
rs6469789	0.90[CHB][hapmap]
rs7006553	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs7010267	0.95[CHB][hapmap];0.88[CHD][hapmap]
rs7463176	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs7464496	0.90[CHB][hapmap]
rs9969672	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv470234	chr8:119856209-119906530	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv517081	chr8:119872439-119886889	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119870200-119873400	Weak transcription	Fetal Intestine Small	intestine
2	chr8:119872200-119873000	Enhancers	GM12878-XiMat	blood

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