Variant report

Variant	rs3134087
Chromosome Location	chr8:119859169-119859170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10955908	0.84[ASN][1000 genomes]
rs13250753	0.84[ASN][1000 genomes]
rs13277230	0.80[ASN][1000 genomes]
rs13439134	0.80[ASN][1000 genomes]
rs1353171	0.96[ASN][1000 genomes]
rs2035977	0.91[EUR][1000 genomes]
rs2035979	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2087998	0.86[ASN][1000 genomes]
rs2101752	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2326045	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2326048	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3103968	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3103969	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3103970	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3103971	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3103995	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3133589	0.92[ASN][1000 genomes]
rs4407910	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv470234	chr8:119856209-119906530	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119856600-119861200	Weak transcription	HSMMtube	muscle
2	chr8:119856600-119862200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:119856600-119862400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:119856800-119861800	Weak transcription	NHEK	skin
5	chr8:119856800-119862000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:119856800-119862200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:119857000-119861800	Weak transcription	HMEC	breast
8	chr8:119857000-119862000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:119858200-119862000	Enhancers	Hela-S3	cervix
10	chr8:119858400-119859200	Enhancers	NHDF-Ad	bronchial
11	chr8:119859000-119862000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:119859000-119862200	Weak transcription	Osteobl	bone
13	chr8:119859000-119862400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:119859000-119862800	Weak transcription	HSMM	muscle
15	chr8:119859000-119864200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links