Variant report

Variant	rs13250753
Chromosome Location	chr8:119906692-119906693
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10101385	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10505348	1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs10955908	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955915	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11573824	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11573829	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11573885	0.94[CHB][hapmap];0.88[ASN][1000 genomes]
rs11992136	1.00[CHB][hapmap]
rs13277230	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13439134	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1353171	0.85[ASN][1000 genomes]
rs1485289	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1872426	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs1905786	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs1982763	0.88[ASN][1000 genomes]
rs2035979	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2062375	1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2062377	0.83[CEU][hapmap];0.88[CHB][hapmap]
rs2073618	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs2101752	0.84[ASN][1000 genomes]
rs2326045	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2326048	0.81[ASN][1000 genomes]
rs3103968	0.84[ASN][1000 genomes]
rs3103969	0.84[ASN][1000 genomes]
rs3103970	0.84[ASN][1000 genomes]
rs3103971	0.84[ASN][1000 genomes]
rs3103995	0.86[ASN][1000 genomes]
rs3134087	0.84[ASN][1000 genomes]
rs4242592	1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs4319131	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4355801	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4407910	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4876869	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4876876	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs6415470	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6469788	1.00[CHB][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6469789	1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6992497	0.83[ASN][1000 genomes]
rs7006553	1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs7010267	0.94[CHB][hapmap];0.87[ASN][1000 genomes]
rs7014574	0.85[ASN][1000 genomes]
rs72680380	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7463176	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7464496	0.94[CHB][hapmap];0.87[ASN][1000 genomes]
rs9969672	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv891415	chr8:119886923-119921354	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119903800-119908200	Weak transcription	Fetal Intestine Small	intestine

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