Variant report

Variant	rs1494568
Chromosome Location	chr5:35819634-35819635
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12054998	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12516343	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1353254	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1494567	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1494569	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4263524	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7709856	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs903390	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs991571	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35808800-35822400	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr5:35816000-35829200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:35817600-35820400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:35817800-35820000	Weak transcription	Fetal Thymus	thymus
5	chr5:35817800-35820600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:35817800-35821800	Enhancers	Primary T cells from cord blood	blood
7	chr5:35817800-35822000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr5:35817800-35822000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr5:35817800-35822200	Weak transcription	Dnd41	blood
10	chr5:35817800-35822600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr5:35818000-35820000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr5:35818600-35821600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr5:35819000-35830200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr5:35819400-35820200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr5:35819400-35821400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr5:35819600-35820000	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr5:35819600-35835600	Enhancers	Primary T killer memory cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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