Variant report

Variant	rs12054998
Chromosome Location	chr5:35839347-35839348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12516343	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1353254	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1494567	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1494568	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1494569	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2201408	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2361396	0.82[AMR][1000 genomes]
rs7709856	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs903390	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35837200-35840800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:35837600-35839400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr5:35839000-35840000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr5:35839000-35840000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr5:35839000-35840000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr5:35839000-35840000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr5:35839000-35840200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr5:35839000-35840600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr5:35839000-35841800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr5:35839000-35842000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr5:35839200-35839600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr5:35839200-35839600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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