Variant report
| Variant | rs2201408 |
|---|---|
| Chromosome Location | chr5:35846928-35846929 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10044883 | 0.82[ASN][1000 genomes] |
| rs10063445 | 0.87[ASN][1000 genomes] |
| rs10074095 | 0.87[ASN][1000 genomes] |
| rs10074127 | 0.87[ASN][1000 genomes] |
| rs10461959 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10941267 | 0.87[ASN][1000 genomes] |
| rs11567762 | 0.84[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12054998 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12516343 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1353251 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1389830 | 0.87[ASN][1000 genomes] |
| rs1389831 | 0.87[ASN][1000 genomes] |
| rs1423657 | 0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1423658 | 0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1494555 | 0.87[ASN][1000 genomes] |
| rs1494556 | 0.87[ASN][1000 genomes] |
| rs1494557 | 0.87[ASN][1000 genomes] |
| rs1494567 | 0.81[AMR][1000 genomes] |
| rs1862634 | 0.85[ASN][1000 genomes] |
| rs2361396 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3777090 | 0.87[ASN][1000 genomes] |
| rs4141646 | 0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6451227 | 0.84[ASN][1000 genomes] |
| rs6451228 | 0.87[ASN][1000 genomes] |
| rs6451230 | 0.87[ASN][1000 genomes] |
| rs6893142 | 0.87[ASN][1000 genomes] |
| rs7711202 | 0.87[ASN][1000 genomes] |
| rs7711268 | 0.84[ASN][1000 genomes] |
| rs7716064 | 0.85[ASN][1000 genomes] |
| rs9292616 | 0.87[ASN][1000 genomes] |
| rs9292617 | 0.85[ASN][1000 genomes] |
| rs969129 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022761 | chr5:35775802-35902546 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:35843000-35847000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr5:35846800-35848200 | ZNF genes & repeats | Dnd41 | blood |
