The 2.0 version of rSNPBase

Variant report

Variant rs1494557
Chromosome Location chr5:35868056-35868057
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:36 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:35857400-35869200 Transcr. at gene 5' and 3' Primary T helper cells PMA-I stimulated --
2 chr5:35860000-35869000 Weak transcription HMEC breast
3 chr5:35860000-35876600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr5:35860400-35872800 Weak transcription Spleen Spleen
5 chr5:35860400-35883800 Weak transcription Small Intestine intestine
6 chr5:35861200-35870400 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr5:35862400-35870400 Weak transcription Duodenum Mucosa Duodenum
8 chr5:35862600-35868200 Strong transcription Fetal Thymus thymus
9 chr5:35862600-35868600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr5:35862600-35876200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
11 chr5:35863600-35868800 Weak transcription Lung lung
12 chr5:35863800-35868400 Weak transcription HSMM muscle
13 chr5:35863800-35868800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr5:35863800-35869000 Weak transcription GM12878-XiMat blood
15 chr5:35863800-35876200 Weak transcription NHDF-Ad bronchial
16 chr5:35864200-35869600 Weak transcription Primary B cells from cord blood blood
17 chr5:35864600-35876600 Weak transcription Muscle Satellite Cultured Cells --
18 chr5:35866000-35868800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
19 chr5:35866000-35873400 Genic enhancers Primary T helper memory cells from peripheral blood 2 blood
20 chr5:35866200-35878400 Genic enhancers Primary T killer naive cells fromperipheralblood blood
21 chr5:35866400-35869200 Genic enhancers Primary T cells effector/memory enriched fromperipheralblood blood
22 chr5:35866400-35872400 Genic enhancers Primary T helper cells fromperipheralblood blood
23 chr5:35866600-35872200 Genic enhancers Primary T helper memory cells from peripheral blood 1 blood
24 chr5:35866600-35878800 Genic enhancers Primary T helper naive cells from peripheral blood blood
25 chr5:35866600-35882000 Genic enhancers Dnd41 blood
26 chr5:35867000-35868800 Genic enhancers Primary T cells fromperipheralblood blood
27 chr5:35867200-35872200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr5:35867400-35868200 Transcr. at gene 5' and 3' Primary T killer memory cells from peripheral blood blood
29 chr5:35867400-35869000 Strong transcription Thymus Thymus
30 chr5:35867600-35868600 Strong transcription Primary T regulatory cells fromperipheralblood blood
31 chr5:35867600-35868800 Genic enhancers Primary T cells from cord blood blood
32 chr5:35867600-35869800 Strong transcription Osteobl bone
33 chr5:35867600-35878000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
34 chr5:35867800-35868200 Transcr. at gene 5' and 3' Primary T helper 17 cells PMA-I stimulated --
35 chr5:35867800-35876400 Strong transcription NHLF lung
36 chr5:35867800-35879800 Genic enhancers Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015