Variant report

Variant	rs2361396
Chromosome Location	chr5:35849342-35849343
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35849089..35851096-chr5:35897625..35900411,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10044883	0.86[ASN][1000 genomes]
rs10063445	0.91[ASN][1000 genomes]
rs10074095	0.91[ASN][1000 genomes]
rs10074127	0.91[ASN][1000 genomes]
rs10461959	0.93[CEU][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10941267	0.91[ASN][1000 genomes]
rs11567762	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12054998	0.82[AMR][1000 genomes]
rs12516343	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1353251	0.93[CEU][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1389830	0.91[ASN][1000 genomes]
rs1389831	0.91[ASN][1000 genomes]
rs1423657	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1423658	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1494555	0.91[ASN][1000 genomes]
rs1494556	0.91[ASN][1000 genomes]
rs1494557	0.91[ASN][1000 genomes]
rs1494567	0.93[CEU][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1862634	0.89[ASN][1000 genomes]
rs2201408	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3777090	0.91[ASN][1000 genomes]
rs4141646	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6451227	0.88[ASN][1000 genomes]
rs6451228	0.91[ASN][1000 genomes]
rs6451230	0.91[ASN][1000 genomes]
rs6893142	0.91[ASN][1000 genomes]
rs7711202	0.91[ASN][1000 genomes]
rs7711268	0.88[ASN][1000 genomes]
rs7716064	0.89[ASN][1000 genomes]
rs903390	0.93[CEU][hapmap]
rs9292616	0.91[ASN][1000 genomes]
rs9292617	0.89[ASN][1000 genomes]
rs969129	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35848000-35849800	Weak transcription	Thymus	Thymus
2	chr5:35848000-35850000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr5:35848200-35849600	Weak transcription	Dnd41	blood
4	chr5:35848400-35850000	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr5:35848400-35852200	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr5:35848600-35852000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr5:35848800-35849600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr5:35848800-35849800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr5:35848800-35850000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr5:35848800-35851200	Weak transcription	Fetal Muscle Leg	muscle
11	chr5:35848800-35852400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr5:35849200-35852000	Enhancers	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links