Variant report

Variant	rs6870944
Chromosome Location	chr5:35894541-35894542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10044883	0.89[ASN][1000 genomes]
rs10063445	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10074095	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10074127	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10461959	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10941267	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11567762	0.91[CEU][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12055232	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12516866	0.90[JPT][hapmap]
rs1353251	0.80[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1389830	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1389831	0.84[ASN][1000 genomes]
rs1423657	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1423658	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1494555	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1494556	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1494557	0.84[ASN][1000 genomes]
rs1494567	0.90[JPT][hapmap]
rs1862634	0.85[ASN][1000 genomes]
rs3777090	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4141646	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6451227	0.82[ASN][1000 genomes]
rs6451228	0.84[ASN][1000 genomes]
rs6451230	0.84[ASN][1000 genomes]
rs6862142	0.90[JPT][hapmap]
rs6893142	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7711202	0.84[ASN][1000 genomes]
rs7711268	0.81[ASN][1000 genomes]
rs7716064	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7727840	1.00[YRI][hapmap]
rs852244	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs852246	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs852249	0.85[JPT][hapmap]
rs852250	0.85[JPT][hapmap]
rs852251	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs852252	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs852253	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs860414	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs860416	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs863781	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9292616	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9292617	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs969129	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35891200-35896400	Weak transcription	Thymus	Thymus
2	chr5:35891400-35902400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:35893600-35899400	Enhancers	Dnd41	blood
4	chr5:35894200-35895200	Weak transcription	Fetal Thymus	thymus

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