Variant report

Variant	rs1494813
Chromosome Location	chr1:45957290-45957291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PBX3	chr1:45956704-45957301	A549	lung:	n/a	chr1:45957009-45957029 chr1:45957024-45957033
2	FOS	chr1:45956897-45957349	MCF10A-Er-Src	breast:	n/a	n/a
3	IRF3	chr1:45956902-45957295	HepG2	liver:	n/a	chr1:45957176-45957190
4	RELA	chr1:45955729-45957429	GM12891	blood:	n/a	n/a
5	HEY1	chr1:45956515-45957322	HepG2	liver:	n/a	n/a
6	KAP1	chr1:45956651-45957454	U2OS	brain:	n/a	n/a
7	TBL1XR1	chr1:45956553-45957437	GM12878	blood:	n/a	n/a
8	TCF12	chr1:45956313-45957290	ECC-1	luminal epithelium:	n/a	chr1:45957142-45957149
9	FOS	chr1:45956833-45957400	MCF10A-Er-Src	breast:	n/a	n/a
10	STAT3	chr1:45956889-45957446	MCF10A-Er-Src	breast:	n/a	chr1:45957113-45957125 chr1:45957078-45957085
11	ELF1	chr1:45956644-45957307	HepG2	liver:	n/a	n/a
12	BACH1	chr1:45956699-45957517	H1-hESC	embryonic stem cell:	n/a	n/a
13	CBX3	chr1:45956728-45957402	K562	blood:	n/a	n/a
14	RFX5	chr1:45956725-45957376	Hela-S3	cervix:	n/a	chr1:45957024-45957033
15	USF1	chr1:45956560-45957473	HCT-116	colon:	n/a	n/a
16	ZNF143	chr1:45956708-45957315	GM12878	blood:	n/a	chr1:45956845-45956863
17	MAFK	chr1:45956768-45957555	HepG2	liver:	n/a	chr1:45957294-45957309
18	NFYB	chr1:45956745-45957307	K562	blood:	n/a	chr1:45957061-45957076
19	SIN3A	chr1:45955812-45957435	H1-hESC	embryonic stem cell:	n/a	chr1:45956459-45956470
20	SP1	chr1:45956533-45957515	H1-hESC	embryonic stem cell:	n/a	chr1:45956870-45956879 chr1:45956893-45956907 chr1:45956869-45956879 chr1:45956868-45956880 chr1:45957022-45957043 chr1:45956870-45956879 chr1:45956887-45956899 chr1:45956869-45956879 chr1:45957177-45957187 chr1:45957177-45957186 chr1:45956868-45956880 chr1:45957176-45957188 chr1:45956858-45956872 chr1:45956888-45956898 chr1:45956869-45956878 chr1:45957176-45957188 chr1:45957245-45957266 chr1:45957178-45957187 chr1:45956865-45956879 chr1:45956887-45956899 chr1:45957173-45957187 chr1:45956888-45956898
21	E2F6	chr1:45956548-45957400	H1-hESC	embryonic stem cell:	n/a	chr1:45956869-45956878
22	SIN3AK20	chr1:45955866-45957542	MCF-7	breast:	n/a	n/a
23	NFIC	chr1:45956790-45957295	GM12878	blood:	n/a	n/a
24	SP4	chr1:45956620-45957397	H1-hESC	embryonic stem cell:	n/a	chr1:45956864-45956880 chr1:45956887-45956903 chr1:45956885-45956901 chr1:45956866-45956882
25	FOXA2	chr1:45956825-45957340	HepG2	liver:	n/a	n/a
26	NRF1	chr1:45956383-45957411	GM12878	blood:	n/a	chr1:45956465-45956474 chr1:45956869-45956878
27	CHD2	chr1:45956688-45957351	H1-hESC	embryonic stem cell:	n/a	n/a
28	STAT3	chr1:45956996-45957307	MCF10A-Er-Src	breast:	n/a	chr1:45957113-45957125 chr1:45957078-45957085
29	MAX	chr1:45956222-45957369	ECC-1	luminal epithelium:	n/a	chr1:45956983-45956993 chr1:45956501-45956511 chr1:45956983-45956994 chr1:45956984-45956993 chr1:45956984-45956993 chr1:45956979-45956998 chr1:45956983-45956994 chr1:45956982-45956995 chr1:45956985-45956994 chr1:45956984-45956994 chr1:45956982-45956995 chr1:45956983-45956993 chr1:45956893-45956903 chr1:45956982-45956995 chr1:45956982-45956995 chr1:45956984-45956993 chr1:45957177-45957187
30	MAFF	chr1:45956829-45957480	HepG2	liver:	n/a	chr1:45957292-45957310
31	CEBPB	chr1:45956789-45957441	H1-hESC	embryonic stem cell:	n/a	chr1:45956959-45956970 chr1:45957024-45957032 chr1:45956961-45956972 chr1:45956961-45956972
32	POLR2A	chr1:45956227-45957371	H1-neurons	neurons:	n/a	n/a
33	FOXA1	chr1:45956878-45957324	HepG2	liver:	n/a	n/a
34	MAX	chr1:45956739-45957369	Hela-S3	cervix:	n/a	chr1:45956983-45956993 chr1:45956983-45956994 chr1:45956984-45956993 chr1:45956984-45956993 chr1:45956979-45956998 chr1:45956983-45956994 chr1:45956982-45956995 chr1:45956985-45956994 chr1:45956984-45956994 chr1:45956982-45956995 chr1:45956983-45956993 chr1:45956893-45956903 chr1:45956982-45956995 chr1:45956982-45956995 chr1:45956984-45956993 chr1:45957177-45957187
35	FOXM1	chr1:45956548-45957530	ECC-1	luminal epithelium:	n/a	n/a
36	FOXM1	chr1:45956455-45957431	GM12878	blood:	n/a	n/a
37	FOXA1	chr1:45956721-45957438	HepG2	liver:	n/a	n/a
38	RUNX3	chr1:45956588-45957375	GM12878	blood:	n/a	n/a
39	MYBL2	chr1:45956544-45957334	HepG2	liver:	n/a	n/a
40	RFX5	chr1:45956526-45957356	HepG2	liver:	n/a	chr1:45957024-45957033
41	PML	chr1:45955975-45957356	GM12878	blood:	n/a	n/a
42	MXI1	chr1:45955657-45957822	SK-N-SH	brain:	n/a	n/a
43	TEAD4	chr1:45956764-45957430	HepG2	liver:	n/a	n/a
44	HA-E2F1	chr1:45956240-45957332	MCF-7	breast:	n/a	chr1:45956869-45956878 chr1:45956423-45956432
45	CREB1	chr1:45956626-45957473	GM12878	blood:	n/a	n/a
46	CUX1	chr1:45956767-45957418	GM12878	blood:	n/a	n/a
47	ELF1	chr1:45956791-45957316	A549	lung:	n/a	n/a
48	MAZ	chr1:45956523-45957327	HepG2	liver:	n/a	chr1:45956983-45956993 chr1:45956983-45956994 chr1:45956984-45956993 chr1:45956984-45956993 chr1:45956979-45956998 chr1:45956983-45956994 chr1:45956982-45956995 chr1:45956985-45956994 chr1:45956984-45956994 chr1:45956982-45956995 chr1:45956983-45956993 chr1:45956893-45956903 chr1:45956982-45956995 chr1:45956982-45956995 chr1:45956984-45956993 chr1:45957177-45957187
49	NFIC	chr1:45956623-45957300	GM12878	blood:	n/a	n/a
50	MAX	chr1:45956492-45957329	H1-hESC	embryonic stem cell:	n/a	chr1:45956983-45956993 chr1:45956501-45956511 chr1:45956983-45956994 chr1:45956984-45956993 chr1:45956984-45956993 chr1:45956979-45956998 chr1:45956983-45956994 chr1:45956982-45956995 chr1:45956985-45956994 chr1:45956984-45956994 chr1:45956982-45956995 chr1:45956983-45956993 chr1:45956893-45956903 chr1:45956982-45956995 chr1:45956982-45956995 chr1:45956984-45956993 chr1:45957177-45957187

No.	Distal block	Cell Line	Cell type
1	chr1:45285788..45287564-chr1:45957142..45958713,2	K562	blood:
2	chr1:45954972..45958180-chr1:45986651..45988959,5	K562	blood:
3	chr1:45284051..45286963-chr1:45955416..45958247,2	MCF-7	breast:
4	chr1:45804942..45806889-chr1:45955165..45957556,2	K562	blood:
5	chr1:45956512..45959436-chr1:45986078..45988665,3	MCF-7	breast:
6	chr1:45805035..45807382-chr1:45957250..45960213,2	MCF-7	breast:
7	chr1:45954905..45960579-chr1:45960652..45966878,10	K562	blood:
8	chr1:45957125..45959472-chr1:46015494..46017725,2	K562	blood:
9	chr1:45804236..45806527-chr1:45955097..45957372,3	MCF-7	breast:

Variant related genes	Relation type
TESK2	TF binding region
ENSG00000132781	Chromatin interaction
ENSG00000202444	Chromatin interaction
ENSG00000236624	Chromatin interaction
ENSG00000132763	Chromatin interaction
ENSG00000132773	Chromatin interaction
ENSG00000117448	Chromatin interaction
ENSG00000117450	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 23 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10157597	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1044717	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10493120	0.86[GIH][hapmap];1.00[MEX][hapmap]
rs10736426	0.96[CEU][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10789466	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1088099	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11211110	0.86[GIH][hapmap];1.00[MEX][hapmap]
rs11211113	0.83[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs11211132	1.00[ASW][hapmap];0.96[CEU][hapmap];0.96[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11211134	0.91[EUR][1000 genomes]
rs12038608	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12042481	0.85[CHB][hapmap];0.83[CHD][hapmap];0.85[ASN][1000 genomes]
rs12047498	0.85[ASN][1000 genomes]
rs12048936	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12082256	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12145526	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12729974	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12749658	0.91[EUR][1000 genomes]
rs1337902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1691217	0.86[GIH][hapmap];0.89[MEX][hapmap]
rs1765711	1.00[JPT][hapmap]
rs1974271	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2065708	0.85[CHB][hapmap];0.83[CHD][hapmap]
rs2077808	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2152077	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2356555	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2356559	1.00[ASW][hapmap];0.96[CEU][hapmap];0.81[CHD][hapmap];0.96[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2356560	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2356561	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2991966	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2993257	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2993259	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34315657	0.81[EUR][1000 genomes]
rs3748643	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4233498	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4660306	1.00[ASW][hapmap];0.96[CEU][hapmap];0.96[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4660309	0.86[EUR][1000 genomes]
rs4660860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4660862	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4660864	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4660866	0.86[EUR][1000 genomes]
rs4660867	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4660868	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4660871	0.82[EUR][1000 genomes]
rs4660872	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6429566	0.82[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap]
rs6429567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6429569	0.96[CEU][hapmap];0.96[GIH][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6667191	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6673477	0.82[EUR][1000 genomes]
rs6688424	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6688516	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7516006	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7522705	0.96[CEU][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7534467	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7536557	0.96[CEU][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7539253	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7543076	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7546268	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7549093	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs781059	0.83[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs781060	0.83[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs781061	1.00[JPT][hapmap]
rs781066	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs882803	0.96[CEU][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs937290	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs945179	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9725380	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9803979	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498036	chr1:45428030-46050934	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	esv1795802	chr1:45819489-46009818	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
3	esv1831217	chr1:45819489-46009818	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
4	nsv530016	chr1:45868543-46069020	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
5	nsv829726	chr1:45897581-46103186	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
6	nsv529631	chr1:45905936-46335246	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	207 gene(s)	inside rSNPs	diseases
7	nsv932680	chr1:45935520-46686477	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases
8	nsv868828	chr1:45953923-46686477	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases

mRNA abundance (count:23)

SNP	Gene	Cis/trans	Tissue	Source
rs1494813	CCDC163P	cis	Esophagus Muscularis	GTEx
rs1494813	CCDC163P	cis	Artery Aorta	GTEx
rs1494813	CCDC163P	cis	Thyroid	GTEx
rs1494813	TESK2	cis	multi-tissue	Pritchard
rs1494813	CCDC163P	cis	lung	GTEx
rs1494813	CYP4A11	cis	parietal	SCAN
rs1494813	TESK2	cis	lymphoblastoid	seeQTL
rs1494813	MMACHC	cis	multi-tissue	Pritchard
rs1494813	CCDC163P	cis	Heart Left Ventricle	GTEx
rs1494813	LOC126661	cis	uninvolved skin	skin_eQTL
rs1494813	CYP4Z2P	cis	parietal	SCAN
rs1494813	CCDC163P	cis	Adipose Subcutaneous	GTEx
rs1494813	CCDC163P	cis	Skin Sun Exposed Lower leg	GTEx
rs1494813	BEND5	cis	cerebellum	SCAN
rs1494813	CCDC163P	cis	Whole Blood	GTEx
rs1494813	LOC126661	Cis_1M	lymphoblastoid	RTeQTL
rs1494813	CCDC163P	cis	Nerve Tibial	GTEx
rs1494813	CCDC163P	cis	Stomach	GTEx
rs1494813	ST3GAL3	cis	parietal	SCAN
rs1494813	CCDC163P	cis	Artery Tibial	GTEx
rs1494813	CCDC163P	cis	Esophagus Mucosa	GTEx
rs1494813	CCDC163P	cis	Muscle Skeletal	GTEx
rs1494813	CCDC163P	cis	lymphoblastoid	seeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45955000-45957400	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr1:45955000-45957600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:45955200-45957400	Active TSS	H9 Cell Line	embryonic stem cell
4	chr1:45955200-45957400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:45955200-45957400	Active TSS	Brain Cingulate Gyrus	brain
6	chr1:45955200-45957600	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr1:45955200-45957600	Active TSS	Colonic Mucosa	Colon
8	chr1:45955400-45957400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:45955400-45957600	Active TSS	Fetal Intestine Large	intestine
10	chr1:45955400-45957600	Active TSS	Fetal Kidney	kidney
11	chr1:45955400-45957600	Active TSS	Ovary	ovary
12	chr1:45955600-45957400	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr1:45955600-45957400	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr1:45955600-45957600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:45955600-45957600	Active TSS	Colon Smooth Muscle	Colon
16	chr1:45955600-45957600	Active TSS	Right Atrium	heart
17	chr1:45955600-45957600	Active TSS	Right Ventricle	heart
18	chr1:45955800-45957400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:45955800-45957400	Active TSS	Aorta	Aorta
20	chr1:45955800-45957400	Active TSS	Fetal Intestine Small	intestine
21	chr1:45955800-45957400	Active TSS	Left Ventricle	heart
22	chr1:45955800-45957400	Active TSS	GM12878-XiMat	blood
23	chr1:45955800-45957400	Active TSS	HMEC	breast
24	chr1:45955800-45957400	Active TSS	NHEK	skin
25	chr1:45955800-45957600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr1:45955800-45957600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr1:45955800-45957600	Active TSS	Duodenum Mucosa	Duodenum
28	chr1:45955800-45957600	Active TSS	Psoas Muscle	Psoas
29	chr1:45955800-45957800	Active TSS	Brain Substantia Nigra	brain
30	chr1:45955800-45957800	Active TSS	NHDF-Ad	bronchial
31	chr1:45956000-45957400	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr1:45956000-45957400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr1:45956000-45957400	Active TSS	Brain Anterior Caudate	brain
34	chr1:45956000-45957400	Active TSS	Brain Hippocampus Middle	brain
35	chr1:45956000-45957400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
36	chr1:45956000-45957400	Active TSS	Fetal Lung	lung
37	chr1:45956000-45957400	Active TSS	Placenta Amnion	Placenta Amnion
38	chr1:45956000-45957400	Active TSS	Thymus	Thymus
39	chr1:45956000-45957400	Active TSS	HSMM	muscle
40	chr1:45956000-45957400	Active TSS	HSMMtube	muscle
41	chr1:45956000-45957600	Active TSS	ES-I3 Cell Line	embryonic stem cell
42	chr1:45956000-45957600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
43	chr1:45956200-45957400	Active TSS	Primary T helper naive cells from peripheral blood	blood
44	chr1:45956200-45957400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
45	chr1:45956200-45957400	Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr1:45956200-45957400	Active TSS	Hela-S3	cervix
47	chr1:45956200-45957400	Active TSS	Osteobl	bone
48	chr1:45956200-45957600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr1:45956200-45957600	Active TSS	HUES6 Cell Line	embryonic stem cell
50	chr1:45956200-45957600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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