Variant report

Variant	rs2077808
Chromosome Location	chr1:45988115-45988116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr1:45986470-45988984	A549	lung:	n/a	n/a
2	POLR2A	chr1:45986645-45988635	HepG2	liver:	n/a	n/a
3	EP300	chr1:45987145-45988625	A549	lung:	n/a	n/a
4	POLR2A	chr1:45986657-45988357	PFSK-1	brain:	n/a	n/a
5	POLR2A	chr1:45986478-45988388	SK-N-MC	brain:	n/a	n/a
6	GTF2F1	chr1:45987337-45988232	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr1:45986485-45988729	Hela-S3	cervix:	n/a	n/a
8	HEY1	chr1:45987124-45988688	HepG2	liver:	n/a	n/a
9	RUNX3	chr1:45986564-45988351	GM12878	blood:	n/a	n/a
10	POLR2A	chr1:45986400-45988280	H1-hESC	embryonic stem cell:	n/a	n/a
11	FOSL2	chr1:45988034-45988328	A549	lung:	n/a	n/a
12	RFX5	chr1:45986992-45988879	Hela-S3	cervix:	n/a	chr1:45987244-45987253
13	POLR2A	chr1:45987191-45988404	U87	brain:	n/a	n/a
14	IRF1	chr1:45987312-45988251	K562	blood:	n/a	n/a
15	GATA3	chr1:45987074-45988775	A549	lung:	n/a	n/a
16	MAZ	chr1:45986747-45988549	K562	blood:	n/a	chr1:45987231-45987241 chr1:45987230-45987241 chr1:45987231-45987240 chr1:45987232-45987239 chr1:45987227-45987242 chr1:45987230-45987241 chr1:45987230-45987240 chr1:45987231-45987240
17	MAX	chr1:45986917-45988210	A549	lung:	n/a	chr1:45987231-45987241 chr1:45987230-45987241 chr1:45987231-45987241 chr1:45987231-45987240 chr1:45987232-45987239 chr1:45987227-45987242 chr1:45987230-45987241 chr1:45987230-45987240 chr1:45987231-45987240
18	MAX	chr1:45987027-45988710	Hela-S3	cervix:	n/a	chr1:45987231-45987241 chr1:45987230-45987241 chr1:45987231-45987241 chr1:45987231-45987240 chr1:45987232-45987239 chr1:45987227-45987242 chr1:45987230-45987241 chr1:45987230-45987240 chr1:45987231-45987240
19	TAF1	chr1:45987297-45988227	Hela-S3	cervix:	n/a	n/a
20	MYBL2	chr1:45987153-45988133	HepG2	liver:	n/a	n/a
21	ETS1	chr1:45987158-45988320	A549	lung:	n/a	chr1:45987647-45987660 chr1:45987598-45987607
22	POLR2A	chr1:45986741-45988383	HUVEC	blood vessel:	n/a	n/a
23	POLR2A	chr1:45986814-45988725	Hela-S3	cervix:	n/a	n/a
24	MAX	chr1:45986698-45989010	A549	lung:	n/a	chr1:45987231-45987241 chr1:45987230-45987241 chr1:45987231-45987241 chr1:45987231-45987240 chr1:45987232-45987239 chr1:45987227-45987242 chr1:45987230-45987241 chr1:45987230-45987240 chr1:45987231-45987240
25	PML	chr1:45986856-45988444	GM12878	blood:	n/a	n/a
26	POLR2A	chr1:45986441-45988300	GM12892	blood:	n/a	n/a
27	ATF2	chr1:45987163-45988423	GM12878	blood:	n/a	n/a
28	ATF2	chr1:45987298-45988169	H1-hESC	embryonic stem cell:	n/a	n/a
29	CHD2	chr1:45987098-45988220	H1-hESC	embryonic stem cell:	n/a	chr1:45987598-45987607
30	ATF2	chr1:45987278-45988221	GM12878	blood:	n/a	n/a
31	RAD21	chr1:45987165-45988143	HepG2	liver:	n/a	n/a
32	MAZ	chr1:45986818-45988311	GM12878	blood:	n/a	chr1:45987231-45987241 chr1:45987230-45987241 chr1:45987231-45987240 chr1:45987232-45987239 chr1:45987227-45987242 chr1:45987230-45987241 chr1:45987230-45987240 chr1:45987231-45987240
33	CEBPB	chr1:45987380-45988739	A549	lung:	n/a	n/a
34	POLR2A	chr1:45986674-45988666	HCT-116	colon:	n/a	n/a
35	BATF	chr1:45988062-45988286	GM12878	blood:	n/a	n/a
36	POLR2A	chr1:45986018-45988461	GM12892	blood:	n/a	n/a
37	RELA	chr1:45987105-45988319	GM18951	blood:	n/a	n/a
38	SIN3AK20	chr1:45986844-45988285	MCF-7	breast:	n/a	n/a
39	SP1	chr1:45986694-45988854	A549	lung:	n/a	chr1:45987640-45987651 chr1:45987628-45987639
40	REST	chr1:45986925-45988335	H1-neurons	neurons:	n/a	chr1:45987560-45987580 chr1:45987563-45987576 chr1:45987560-45987580 chr1:45987568-45987578 chr1:45986951-45986971 chr1:45987082-45987096
41	MYC	chr1:45986734-45988706	K562	blood:	n/a	chr1:45987231-45987241 chr1:45987230-45987241 chr1:45987231-45987241 chr1:45987231-45987240 chr1:45987232-45987239 chr1:45987227-45987242 chr1:45987230-45987241 chr1:45987230-45987240 chr1:45987231-45987240
42	POLR2A	chr1:45986937-45988202	MCF10A-Er-Src	breast:	n/a	n/a
43	POLR2A	chr1:45986932-45988222	MCF10A-Er-Src	breast:	n/a	n/a
44	CHD2	chr1:45986813-45988170	K562	blood:	n/a	chr1:45987598-45987607
45	UBTF	chr1:45986460-45988577	K562	blood:	n/a	n/a
46	RFX5	chr1:45987321-45988152	H1-hESC	embryonic stem cell:	n/a	n/a
47	STAT3	chr1:45987974-45988165	MCF10A-Er-Src	breast:	n/a	n/a
48	POLR2A	chr1:45987057-45988379	SK-N-SH	brain:	n/a	n/a
49	JUND	chr1:45987309-45988398	K562	blood:	n/a	n/a
50	MAX	chr1:45986693-45988300	K562	blood:	n/a	chr1:45987231-45987241 chr1:45987230-45987241 chr1:45987231-45987241 chr1:45987231-45987240 chr1:45987232-45987239 chr1:45987227-45987242 chr1:45987230-45987241 chr1:45987230-45987240 chr1:45987231-45987240

No.	Distal block	Cell Line	Cell type
1	chr1:45984510..45988941-chr1:46031540..46035902,8	MCF-7	breast:
2	chr1:45973182..45975128-chr1:45984664..45989019,3	MCF-7	breast:
3	chr1:45184712..45189957-chr1:45986029..45989344,7	K562	blood:
4	chr1:45987412..45988278-chr1:153505933..153506459,2	Hela-S3	cervix:
5	chr1:45985920..45989261-chr1:46150872..46154561,4	K562	blood:
6	chr1:45982342..45989534-chr1:46006947..46020678,57	K562	blood:
7	chr1:45186094..45189073-chr1:45986029..45988855,6	K562	blood:
8	chr1:45975860..45989626-chr1:46030076..46041078,36	K562	blood:
9	chr1:45985760..45988673-chr3:181223417..181224917,2	K562	blood:
10	chr1:45283995..45285689-chr1:45985443..45988306,2	K562	blood:
11	chr1:45954972..45958180-chr1:45986651..45988959,5	K562	blood:
12	chr1:45273605..45276582-chr1:45986789..45988627,2	K562	blood:
13	chr1:45987252..45988185-chr6:30312832..30313360,2	Hela-S3	cervix:
14	chr1:45987671..45988301-chr12:49075542..49076208,2	Hela-S3	cervix:
15	chr1:45976870..45989534-chr1:46007918..46019226,54	K562	blood:
16	chr1:45987048..45988199-chr20:62151709..62152782,3	Hela-S3	cervix:
17	chr1:45805140..45807328-chr1:45987853..45992059,3	K562	blood:
18	chr1:45984465..45989261-chr1:46150683..46156386,7	K562	blood:
19	chr1:45988000..45988805-chr6:30688919..30689665,2	Hela-S3	cervix:
20	chr1:45985569..45992282-chr1:46014173..46025125,38	MCF-7	breast:
21	chr1:45987345..45988226-chr17:62658109..62658854,2	Hela-S3	cervix:
22	chr1:45987519..45988330-chr1:149223869..149224369,2	Hela-S3	cervix:
23	chr1:45987425..45988326-chr17:41465828..41466368,2	Hela-S3	cervix:
24	chr1:45923357..45924859-chr1:45987046..45988646,2	K562	blood:
25	chr1:45987619..45988120-chr12:56497656..56498556,2	Hela-S3	cervix:
26	chr1:45982844..45990993-chr1:46030121..46038313,25	K562	blood:
27	chr1:45980210..45995142-chr1:46046095..46057139,89	K562	blood:
28	chr1:45284090..45287076-chr1:45986937..45989870,4	K562	blood:
29	chr1:45987351..45988147-chr19:13056243..13056980,2	Hela-S3	cervix:
30	chr1:45974558..45995867-chr1:46046173..46057010,94	K562	blood:
31	chr1:45987644..45988470-chr7:66146973..66147500,2	Hela-S3	cervix:
32	chr1:45987401..45988329-chr15:101458772..101459648,2	Hela-S3	cervix:
33	chr1:45986151..45989227-chr1:46047437..46050636,3	MCF-7	breast:
34	chr1:45476953..45479637-chr1:45985604..45989189,5	K562	blood:
35	chr1:45239811..45242258-chr1:45985710..45988896,3	K562	blood:
36	chr1:45987426..45988309-chr16:1429020..1429960,2	Hela-S3	cervix:
37	chr1:45987412..45988185-chr7:86781410..86782260,3	Hela-S3	cervix:
38	chr1:45987496..45988124-chr10:43931979..43932884,2	Hela-S3	cervix:
39	chr1:45987441..45988328-chr20:48806947..48807576,2	HCT-116	colon:
40	chr1:45987489..45988144-chr7:139476148..139477015,2	Hela-S3	cervix:
41	chr1:45987330..45988213-chr12:109124132..109124778,2	Hela-S3	cervix:
42	chr1:45986916..45989039-chr1:46073191..46077083,3	K562	blood:
43	chr1:45987401..45988242-chr1:154155181..154155885,2	Hela-S3	cervix:
44	chr1:45987332..45989335-chr1:46087766..46089426,2	K562	blood:
45	chr1:45985342..45989391-chr1:46011113..46019467,18	MCF-7	breast:
46	chr1:45985980..45988948-chr1:46213742..46217743,4	K562	blood:
47	chr1:45982735..45988890-chr1:46031987..46038228,10	MCF-7	breast:
48	chr1:45987458..45988329-chr17:36981493..36982160,2	Hela-S3	cervix:
49	chr1:45956512..45959436-chr1:45986078..45988665,3	MCF-7	breast:
50	chr1:45307699..45310286-chr1:45986112..45988725,2	K562	blood:

Variant related genes	Relation type
PRDX1	TF binding region
ENSG00000159588	Chromatin interaction
ENSG00000225721	Chromatin interaction
ENSG00000154710	Chromatin interaction
ENSG00000132763	Chromatin interaction
ENSG00000059377	Chromatin interaction
ENSG00000159596	Chromatin interaction
ENSG00000108854	Chromatin interaction
ENSG00000139620	Chromatin interaction
ENSG00000108296	Chromatin interaction
ENSG00000224046	Chromatin interaction
ENSG00000265529	Chromatin interaction
ENSG00000179262	Chromatin interaction
ENSG00000199377	Chromatin interaction
ENSG00000226499	Chromatin interaction
ENSG00000202444	Chromatin interaction
ENSG00000126107	Chromatin interaction
ENSG00000222009	Chromatin interaction
ENSG00000132781	Chromatin interaction
ENSG00000059145	Chromatin interaction
ENSG00000200169	Chromatin interaction
ENSG00000238279	Chromatin interaction
ENSG00000117425	Chromatin interaction
ENSG00000197429	Chromatin interaction
ENSG00000070759	Chromatin interaction
ENSG00000196230	Chromatin interaction
ENSG00000110880	Chromatin interaction
ENSG00000159592	Chromatin interaction
ENSG00000241370	Chromatin interaction
ENSG00000135164	Chromatin interaction
ENSG00000259583	Chromatin interaction
ENSG00000243660	Chromatin interaction
ENSG00000142937	Chromatin interaction
ENSG00000264294	Chromatin interaction
ENSG00000200913	Chromatin interaction
ENSG00000117448	Chromatin interaction
ENSG00000126088	Chromatin interaction
ENSG00000125534	Chromatin interaction
ENSG00000263791	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000132773	Chromatin interaction
ENSG00000170515	Chromatin interaction
ENSG00000132780	Chromatin interaction
ENSG00000172216	Chromatin interaction
ENSG00000235294	Chromatin interaction
ENSG00000143549	Chromatin interaction
ENSG00000198520	Chromatin interaction
ENSG00000154237	Chromatin interaction
ENSG00000206737	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10157597	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1044717	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10736426	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10789466	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1088099	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11211132	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211134	0.94[EUR][1000 genomes]
rs11211138	0.80[EUR][1000 genomes]
rs12038608	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12048936	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12082256	0.88[EUR][1000 genomes]
rs12145526	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12729974	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12749658	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1337902	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1494813	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1974271	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2152077	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2356555	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2356560	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2356561	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2991966	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2993257	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2993259	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34315657	0.83[EUR][1000 genomes]
rs3748643	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4233498	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4660306	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4660309	0.89[EUR][1000 genomes]
rs4660860	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4660862	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4660864	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4660866	0.85[EUR][1000 genomes]
rs4660867	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4660868	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4660871	0.84[EUR][1000 genomes]
rs4660872	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6429567	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6429569	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6667191	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6673477	0.82[EUR][1000 genomes]
rs6688424	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6688516	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7516006	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7522705	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7534467	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7536557	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7539253	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7543076	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7546268	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7549093	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs781066	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs882803	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs937290	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs945179	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9725380	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9803979	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498036	chr1:45428030-46050934	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	esv1795802	chr1:45819489-46009818	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
3	esv1831217	chr1:45819489-46009818	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
4	nsv530016	chr1:45868543-46069020	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
5	nsv829726	chr1:45897581-46103186	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
6	nsv529631	chr1:45905936-46335246	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	207 gene(s)	inside rSNPs	diseases
7	nsv932680	chr1:45935520-46686477	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases
8	nsv868828	chr1:45953923-46686477	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs2077808	CCDC163P	cis	Whole Blood	GTEx
rs2077808	CCDC163P	cis	Stomach	GTEx
rs2077808	CCDC163P	cis	Esophagus Mucosa	GTEx
rs2077808	CCDC163P	cis	Artery Tibial	GTEx
rs2077808	CCDC163P	cis	Muscle Skeletal	GTEx
rs2077808	CCDC163P	cis	Esophagus Muscularis	GTEx
rs2077808	CCDC163P	cis	Heart Left Ventricle	GTEx
rs2077808	CCDC163P	cis	Nerve Tibial	GTEx
rs2077808	LOC126661	Cis_1M	lymphoblastoid	RTeQTL
rs2077808	CCDC163P	cis	Adipose Subcutaneous	GTEx
rs2077808	CCDC163P	cis	Thyroid	GTEx
rs2077808	CCDC163P	cis	lung	GTEx
rs2077808	CCDC163P	cis	Skin Sun Exposed Lower leg	GTEx
rs2077808	CCDC163P	cis	Artery Aorta	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45985200-45988200	Active TSS	NHLF	lung
2	chr1:45985200-45988400	Active TSS	H9 Cell Line	embryonic stem cell
3	chr1:45985200-45988600	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr1:45985400-45988200	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr1:45985400-45988200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:45985400-45988600	Active TSS	Hela-S3	cervix
7	chr1:45985400-45988800	Active TSS	A549	lung
8	chr1:45985600-45988200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:45985600-45988200	Active TSS	Fetal Brain Female	brain
10	chr1:45985600-45988200	Active TSS	Stomach Smooth Muscle	stomach
11	chr1:45985800-45988200	Active TSS	Ovary	ovary
12	chr1:45986000-45988200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:45986000-45988200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:45986000-45988200	Active TSS	Aorta	Aorta
15	chr1:45986000-45988200	Active TSS	Fetal Intestine Large	intestine
16	chr1:45986000-45988200	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr1:45986000-45988400	Active TSS	Rectal Smooth Muscle	rectum
18	chr1:45986200-45988200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:45986200-45988200	Active TSS	Fetal Muscle Trunk	muscle
20	chr1:45986200-45988200	Active TSS	Left Ventricle	heart
21	chr1:45986200-45988200	Active TSS	Psoas Muscle	Psoas
22	chr1:45986200-45988200	Active TSS	Right Ventricle	heart
23	chr1:45986400-45988200	Active TSS	Fetal Brain Male	brain
24	chr1:45986400-45988200	Active TSS	Placenta Amnion	Placenta Amnion
25	chr1:45986600-45988800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr1:45987400-45988200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:45987600-45988200	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
28	chr1:45987600-45988200	Flanking Active TSS	Primary B cells from peripheral blood	blood
29	chr1:45987600-45988200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
30	chr1:45987600-45988200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
31	chr1:45987600-45988200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
32	chr1:45987600-45988200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr1:45987600-45988400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr1:45987600-45988400	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr1:45987800-45988200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:45987800-45988200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr1:45987800-45988200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr1:45987800-45988200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr1:45987800-45988200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
40	chr1:45987800-45988200	Flanking Active TSS	Primary B cells from cord blood	blood
41	chr1:45987800-45988200	Flanking Active TSS	Primary T cells from cord blood	blood
42	chr1:45987800-45988200	Flanking Active TSS	Primary hematopoietic stem cells	blood
43	chr1:45987800-45988200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr1:45987800-45988200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr1:45987800-45988200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
46	chr1:45987800-45988200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
47	chr1:45987800-45988200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
48	chr1:45987800-45988200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
49	chr1:45987800-45988200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr1:45987800-45988200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links