Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12632769	0.85[ASN][1000 genomes]
rs12633748	0.98[ASN][1000 genomes]
rs12635791	0.98[ASN][1000 genomes]
rs1495890	0.95[ASN][1000 genomes]
rs1603323	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34120884	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35397503	0.95[ASN][1000 genomes]
rs35706703	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59459179	0.94[ASN][1000 genomes]
rs61272271	0.98[ASN][1000 genomes]
rs6783564	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6793988	0.85[ASN][1000 genomes]
rs73144207	0.95[ASN][1000 genomes]
rs7615350	0.83[ASN][1000 genomes]
rs7634263	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636445	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814295	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821248	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823746	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9832811	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9833387	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877115	chr3:86278951-86554319	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv834753	chr3:86386749-86546500	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1495887	CADM2	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86438200-86457200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:86454200-86457400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:86454200-86457800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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