Variant report
Variant | rs59459179 |
---|---|
Chromosome Location | chr3:86462495-86462496 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12632769 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs12633748 | 0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs12635791 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1495887 | 0.94[ASN][1000 genomes] |
rs1495890 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1603323 | 0.94[ASN][1000 genomes] |
rs35397503 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs61272271 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6793988 | 0.88[ASN][1000 genomes] |
rs73144207 | 0.92[ASN][1000 genomes] |
rs7615350 | 0.89[ASN][1000 genomes] |
rs7634263 | 0.94[ASN][1000 genomes] |
rs7636445 | 0.94[ASN][1000 genomes] |
rs9814295 | 0.94[ASN][1000 genomes] |
rs9821248 | 0.94[ASN][1000 genomes] |
rs9833387 | 0.94[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
2 | nsv877115 | chr3:86278951-86554319 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
3 | nsv834753 | chr3:86386749-86546500 | Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:86461400-86470200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |