Variant report

Variant	rs1496252
Chromosome Location	chr12:117084532-117084533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1011494	0.82[ASN][1000 genomes]
rs10850691	0.82[ASN][1000 genomes]
rs11068121	0.81[ASN][1000 genomes]
rs1496251	0.82[ASN][1000 genomes]
rs903820	0.81[ASN][1000 genomes]
rs953004	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560321	chr12:117083560-117087901	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv560322	chr12:117083560-117088109	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1816116	chr12:117084285-117088109	Bivalent Enhancer Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv560323	chr12:117084285-117088109	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117078000-117085800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr12:117078400-117085600	Weak transcription	Thymus	Thymus
3	chr12:117080600-117088000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:117080600-117088000	Weak transcription	Adipose Nuclei	Adipose
5	chr12:117081200-117085400	Weak transcription	Dnd41	blood
6	chr12:117081400-117085000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr12:117082400-117086200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr12:117083200-117085000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr12:117083200-117088200	Weak transcription	Right Atrium	heart
10	chr12:117083800-117084600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr12:117084000-117088000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr12:117084000-117088400	Weak transcription	Lung	lung
13	chr12:117084000-117093200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr12:117084200-117084600	Enhancers	Pancreas	Pancrea
15	chr12:117084200-117088000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr12:117084400-117085000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr12:117084400-117086800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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