Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:55707866..55710526-chr4:55713081..55715385,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1123272	0.83[EUR][1000 genomes]
rs1497477	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17695485	0.82[EUR][1000 genomes]
rs1874653	0.82[AMR][1000 genomes]
rs1948607	0.87[CEU][hapmap]
rs2055222	0.85[EUR][1000 genomes]
rs2173228	0.85[EUR][1000 genomes]
rs2270674	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2646314	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2646317	0.85[EUR][1000 genomes]
rs2646318	0.85[EUR][1000 genomes]
rs2646355	0.85[EUR][1000 genomes]
rs2726626	0.85[EUR][1000 genomes]
rs2726627	0.85[EUR][1000 genomes]
rs2726628	0.85[EUR][1000 genomes]
rs2726630	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2726632	0.85[EUR][1000 genomes]
rs3920049	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs4280801	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs4345236	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs716919	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs7668976	0.81[EUR][1000 genomes]
rs7677880	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7692346	0.83[EUR][1000 genomes]
rs7697169	0.83[EUR][1000 genomes]
rs871692	0.88[CEU][hapmap]
rs871693	0.85[EUR][1000 genomes]
rs871694	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs998615	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv3367952	chr4:55437113-55724644	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv1836939	chr4:55701134-55716601	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55709200-55721600	Weak transcription	Fetal Stomach	stomach
2	chr4:55712800-55713800	Enhancers	Brain Germinal Matrix	brain

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