Variant report

Variant	rs149749290
Chromosome Location	chr1:79518888-79518889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv546619	chr1:79233493-79614989	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2830430	chr1:79310760-79555593	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1010441	chr1:79320299-79555315	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1001894	chr1:79351364-79542576	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv535014	chr1:79351364-79542576	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv871276	chr1:79407980-79520554	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv462139	chr1:79471959-79519427	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv546629	chr1:79471959-79519427	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv546630	chr1:79506410-79557804	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv34074	chr1:79513444-79585652	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv546631	chr1:79518810-79614989	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79517600-79519000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr1:79518400-79519000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:79518400-79519000	Active TSS	Muscle Satellite Cultured Cells	--
4	chr1:79518400-79519000	Active TSS	Osteobl	bone
5	chr1:79518400-79519200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:79518400-79519200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:79518400-79519200	Active TSS	Adipose Nuclei	Adipose
8	chr1:79518400-79519200	Active TSS	GM12878-XiMat	blood
9	chr1:79518400-79519200	Active TSS	Monocytes-CD14+_RO01746	blood
10	chr1:79518600-79519000	Active TSS	Primary B cells from cord blood	blood
11	chr1:79518600-79519000	Active TSS	Primary T cells from cord blood	blood
12	chr1:79518600-79519000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:79518600-79519000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:79518600-79519000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:79518600-79519000	Active TSS	Brain Substantia Nigra	brain
16	chr1:79518600-79519000	Active TSS	Duodenum Mucosa	Duodenum
17	chr1:79518600-79519000	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr1:79518600-79519000	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr1:79518600-79519000	Active TSS	Right Atrium	heart
20	chr1:79518600-79519000	Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr1:79518600-79519000	Active TSS	A549	lung
22	chr1:79518600-79519000	Active TSS	Hela-S3	cervix
23	chr1:79518600-79519000	Active TSS	HMEC	breast
24	chr1:79518600-79519200	Active TSS	Primary monocytes fromperipheralblood	blood
25	chr1:79518600-79519200	Active TSS	HUVEC	blood vessel
26	chr1:79518800-79519000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr1:79518800-79519000	Enhancers	Primary B cells from peripheral blood	blood
28	chr1:79518800-79519000	Enhancers	Liver	Liver
29	chr1:79518800-79519000	Flanking Active TSS	NHDF-Ad	bronchial
30	chr1:79518800-79519000	Flanking Active TSS	NHLF	lung
31	chr1:79518800-79519200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr1:79518800-79519200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:79518800-79519200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr1:79518800-79519200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr1:79518800-79519200	Enhancers	Pancreatic Islets	Pancreatic Islet

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