Variant report

Variant	rs1497906
Chromosome Location	chr4:62440881-62440882
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10018746	0.82[CHB][hapmap]
rs10031433	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10866123	0.85[ASN][1000 genomes]
rs10866124	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11131329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11131330	0.85[CHB][hapmap]
rs11131334	0.86[CEU][hapmap];0.86[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11735278	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11939481	0.89[CEU][hapmap]
rs11941524	0.85[ASN][1000 genomes]
rs12504607	0.89[CEU][hapmap]
rs12715703	0.92[ASN][1000 genomes]
rs12715704	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13123468	0.89[CEU][hapmap]
rs13123888	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1391321	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1472425	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1497901	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1497907	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs1497909	0.86[CEU][hapmap]
rs1497916	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs1497921	0.89[CEU][hapmap]
rs1603660	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17239080	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1846160	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2172802	0.81[CHB][hapmap];0.85[ASN][1000 genomes]
rs2343250	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4860417	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4860418	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60279254	0.83[ASN][1000 genomes]
rs6551634	0.86[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6551637	0.89[CEU][hapmap]
rs6551640	0.89[CEU][hapmap]
rs67669396	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6813075	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6817476	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6835374	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6843311	0.85[CEU][hapmap]
rs6851424	0.89[CEU][hapmap]
rs72614740	0.82[ASN][1000 genomes]
rs72614741	0.83[ASN][1000 genomes]
rs7656051	0.88[CEU][hapmap]
rs7669283	0.92[CEU][hapmap];0.90[CHB][hapmap]
rs958862	0.96[CEU][hapmap]
rs9685140	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9991244	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868844	chr4:62241702-62497248	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2753138	chr4:62271444-62442507	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1004815	chr4:62398737-62553769	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv537110	chr4:62398737-62553769	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1004432	chr4:62408333-62444506	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv537111	chr4:62408333-62444506	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv594329	chr4:62416593-62478230	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv879077	chr4:62419426-62545435	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62438600-62441800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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