Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11131329	0.92[CEU][hapmap]
rs11131334	0.85[CEU][hapmap]
rs11939481	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12504607	0.96[CEU][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13123468	0.96[CEU][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13123888	0.87[CEU][hapmap]
rs1391321	0.89[CEU][hapmap]
rs1497896	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1497901	0.85[CEU][hapmap]
rs1497906	0.85[CEU][hapmap]
rs1497907	0.89[CEU][hapmap]
rs1497909	1.00[CEU][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1497916	0.84[CEU][hapmap]
rs1497921	0.96[CEU][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17239080	0.85[CEU][hapmap]
rs1909077	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28721965	0.81[AMR][1000 genomes]
rs34538250	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6551634	0.85[CEU][hapmap]
rs6551637	0.96[CEU][hapmap]
rs6551640	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6817476	0.92[CEU][hapmap]
rs6825200	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6835374	0.85[CEU][hapmap]
rs6851424	0.96[CEU][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs7656051	0.96[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7669283	0.92[CEU][hapmap]
rs958862	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

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